Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0302 and Shewana3_0303 are separated by 138 nucleotides Shewana3_0303 and Shewana3_0304 are separated by 44 nucleotides Shewana3_0304 and Shewana3_0305 are separated by 10 nucleotides
Shewana3_0302: Shewana3_0302 - AraC family transcriptional regulator (RefSeq), at 338,762 to 339,769
_0302
Shewana3_0303: Shewana3_0303 - short-chain dehydrogenase/reductase SDR (RefSeq), at 339,908 to 340,669
_0303
Shewana3_0304: Shewana3_0304 - hypothetical protein (RefSeq), at 340,714 to 341,220
_0304
Shewana3_0305: Shewana3_0305 - alcohol dehydrogenase (RefSeq), at 341,231 to 342,307
_0305
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 338.960 kb on + strand, within Shewana3_0302 at 338.960 kb on + strand, within Shewana3_0302 at 338.968 kb on - strand, within Shewana3_0302 at 338.978 kb on - strand, within Shewana3_0302 at 339.008 kb on + strand, within Shewana3_0302 at 339.027 kb on - strand, within Shewana3_0302 at 339.045 kb on + strand, within Shewana3_0302 at 339.182 kb on - strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.206 kb on + strand, within Shewana3_0302 at 339.243 kb on - strand, within Shewana3_0302 at 339.271 kb on - strand, within Shewana3_0302 at 339.381 kb on - strand, within Shewana3_0302 at 339.594 kb on - strand, within Shewana3_0302 at 339.900 kb on + strand at 339.906 kb on - strand at 339.913 kb on - strand at 339.919 kb on + strand at 340.102 kb on + strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.352 kb on - strand, within Shewana3_0303 at 340.424 kb on - strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.472 kb on + strand, within Shewana3_0303 at 340.485 kb on + strand, within Shewana3_0303 at 340.523 kb on + strand, within Shewana3_0303 at 340.634 kb on - strand at 340.680 kb on + strand at 340.952 kb on + strand, within Shewana3_0304 at 341.016 kb on + strand, within Shewana3_0304 at 341.128 kb on + strand, within Shewana3_0304 at 341.418 kb on + strand, within Shewana3_0305 at 341.476 kb on + strand, within Shewana3_0305 at 341.477 kb on - strand, within Shewana3_0305 at 341.555 kb on + strand, within Shewana3_0305 at 341.563 kb on - strand, within Shewana3_0305 at 341.594 kb on - strand, within Shewana3_0305 at 341.605 kb on - strand, within Shewana3_0305 at 341.652 kb on - strand, within Shewana3_0305
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 338,960 + Shewana3_0302 0.20 -0.1 338,960 + Shewana3_0302 0.20 +0.3 338,968 - Shewana3_0302 0.20 +0.4 338,978 - Shewana3_0302 0.21 +0.1 339,008 + Shewana3_0302 0.24 -0.4 339,027 - Shewana3_0302 0.26 +0.7 339,045 + Shewana3_0302 0.28 -0.9 339,182 - Shewana3_0302 0.42 +1.0 339,189 + Shewana3_0302 0.42 -2.3 339,189 + Shewana3_0302 0.42 -1.3 339,206 + Shewana3_0302 0.44 +0.2 339,243 - Shewana3_0302 0.48 +0.4 339,271 - Shewana3_0302 0.50 +0.2 339,381 - Shewana3_0302 0.61 -0.6 339,594 - Shewana3_0302 0.83 -0.2 339,900 + -0.4 339,906 - -1.2 339,913 - -0.4 339,919 + -0.7 340,102 + Shewana3_0303 0.25 +0.4 340,297 - Shewana3_0303 0.51 +0.3 340,297 - Shewana3_0303 0.51 +0.4 340,352 - Shewana3_0303 0.58 -0.2 340,424 - Shewana3_0303 0.68 -0.1 340,470 + Shewana3_0303 0.74 +0.3 340,470 + Shewana3_0303 0.74 +0.7 340,470 + Shewana3_0303 0.74 +0.2 340,470 + Shewana3_0303 0.74 -0.0 340,472 + Shewana3_0303 0.74 +0.3 340,485 + Shewana3_0303 0.76 +0.3 340,523 + Shewana3_0303 0.81 -0.4 340,634 - -0.1 340,680 + +0.4 340,952 + Shewana3_0304 0.47 +0.1 341,016 + Shewana3_0304 0.60 +0.6 341,128 + Shewana3_0304 0.82 +0.2 341,418 + Shewana3_0305 0.17 +0.1 341,476 + Shewana3_0305 0.23 +0.1 341,477 - Shewana3_0305 0.23 -0.1 341,555 + Shewana3_0305 0.30 +0.9 341,563 - Shewana3_0305 0.31 -0.5 341,594 - Shewana3_0305 0.34 -0.8 341,605 - Shewana3_0305 0.35 -1.9 341,652 - Shewana3_0305 0.39 -0.9
Or see this region's nucleotide sequence