Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0288 and Shewana3_0289 are separated by 21 nucleotides Shewana3_0289 and Shewana3_0290 are separated by 17 nucleotides Shewana3_0290 and Shewana3_0291 are separated by 189 nucleotides
Shewana3_0288: Shewana3_0288 - peptidase M23B (RefSeq), at 321,362 to 321,874
_0288
Shewana3_0289: Shewana3_0289 - hypothetical protein (RefSeq), at 321,896 to 322,477
_0289
Shewana3_0290: Shewana3_0290 - CHAP domain-containing protein (RefSeq), at 322,495 to 323,184
_0290
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Position (kb)
322
323
324 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 321.516 kb on + strand, within Shewana3_0288 at 321.526 kb on - strand, within Shewana3_0288 at 321.566 kb on - strand, within Shewana3_0288 at 321.653 kb on - strand, within Shewana3_0288 at 321.724 kb on + strand, within Shewana3_0288 at 321.873 kb on + strand at 321.885 kb on + strand at 321.885 kb on + strand at 321.893 kb on - strand at 321.975 kb on + strand, within Shewana3_0289 at 322.128 kb on + strand, within Shewana3_0289 at 322.185 kb on - strand, within Shewana3_0289 at 322.220 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.372 kb on + strand, within Shewana3_0289 at 322.408 kb on + strand, within Shewana3_0289 at 322.418 kb on + strand, within Shewana3_0289 at 322.551 kb on + strand at 322.552 kb on - strand at 322.606 kb on - strand, within Shewana3_0290 at 322.638 kb on - strand, within Shewana3_0290 at 322.696 kb on - strand, within Shewana3_0290 at 322.835 kb on - strand, within Shewana3_0290 at 322.937 kb on - strand, within Shewana3_0290 at 323.017 kb on - strand, within Shewana3_0290 at 323.059 kb on + strand, within Shewana3_0290 at 323.224 kb on + strand at 323.232 kb on - strand at 323.291 kb on + strand at 323.315 kb on + strand at 323.334 kb on + strand at 323.473 kb on - strand at 323.542 kb on - strand, within Shewana3_0291 at 323.556 kb on + strand, within Shewana3_0291 at 323.556 kb on + strand, within Shewana3_0291 at 323.564 kb on - strand, within Shewana3_0291 at 323.612 kb on + strand, within Shewana3_0291 at 323.643 kb on - strand, within Shewana3_0291 at 323.729 kb on - strand, within Shewana3_0291 at 323.900 kb on + strand, within Shewana3_0291 at 324.077 kb on - strand, within Shewana3_0291
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 321,516 + Shewana3_0288 0.30 -0.5 321,526 - Shewana3_0288 0.32 -0.7 321,566 - Shewana3_0288 0.40 -0.3 321,653 - Shewana3_0288 0.57 -0.9 321,724 + Shewana3_0288 0.71 -0.1 321,873 + -2.9 321,885 + -0.4 321,885 + -0.5 321,893 - -0.8 321,975 + Shewana3_0289 0.14 -1.6 322,128 + Shewana3_0289 0.40 -0.5 322,185 - Shewana3_0289 0.50 +0.5 322,220 + Shewana3_0289 0.56 -0.2 322,362 + Shewana3_0289 0.80 +0.4 322,362 + Shewana3_0289 0.80 +1.4 322,372 + Shewana3_0289 0.82 -1.2 322,408 + Shewana3_0289 0.88 -0.6 322,418 + Shewana3_0289 0.90 +0.4 322,551 + +0.6 322,552 - -0.2 322,606 - Shewana3_0290 0.16 -1.4 322,638 - Shewana3_0290 0.21 +0.3 322,696 - Shewana3_0290 0.29 -1.1 322,835 - Shewana3_0290 0.49 -0.5 322,937 - Shewana3_0290 0.64 -1.8 323,017 - Shewana3_0290 0.76 -1.0 323,059 + Shewana3_0290 0.82 -0.3 323,224 + +0.7 323,232 - -0.6 323,291 + +0.6 323,315 + +0.9 323,334 + +0.0 323,473 - +0.5 323,542 - Shewana3_0291 0.15 +0.0 323,556 + Shewana3_0291 0.16 +0.3 323,556 + Shewana3_0291 0.16 +0.0 323,564 - Shewana3_0291 0.17 -0.1 323,612 + Shewana3_0291 0.21 -0.2 323,643 - Shewana3_0291 0.24 +0.0 323,729 - Shewana3_0291 0.32 +0.8 323,900 + Shewana3_0291 0.47 -0.7 324,077 - Shewana3_0291 0.63 -0.9
Or see this region's nucleotide sequence