Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0278 and Shewana3_0279 are separated by 8 nucleotides Shewana3_0279 and Shewana3_0280 overlap by 20 nucleotides Shewana3_0280 and Shewana3_0281 are separated by 325 nucleotides Shewana3_0281 and Shewana3_0282 are separated by 46 nucleotides
Shewana3_0278: Shewana3_0278 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 312,150 to 312,953
_0278
Shewana3_0279: Shewana3_0279 - molybdate ABC transporter, inner membrane subunit (RefSeq), at 312,962 to 313,642
_0279
Shewana3_0280: Shewana3_0280 - ABC transporter related (RefSeq), at 313,623 to 314,726
_0280
Shewana3_0281: Shewana3_0281 - hypothetical protein (RefSeq), at 315,052 to 315,573
_0281
Shewana3_0282: Shewana3_0282 - two component transcriptional regulator (RefSeq), at 315,620 to 316,297
_0282
Position (kb)
313
314
315 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 312.783 kb on + strand, within Shewana3_0278 at 312.797 kb on - strand, within Shewana3_0278 at 312.939 kb on - strand at 312.954 kb on + strand at 312.954 kb on + strand at 313.078 kb on + strand, within Shewana3_0279 at 313.078 kb on + strand, within Shewana3_0279 at 313.085 kb on + strand, within Shewana3_0279 at 313.086 kb on - strand, within Shewana3_0279 at 313.086 kb on - strand, within Shewana3_0279 at 313.086 kb on - strand, within Shewana3_0279 at 313.086 kb on - strand, within Shewana3_0279 at 313.178 kb on - strand, within Shewana3_0279 at 313.302 kb on + strand, within Shewana3_0279 at 313.302 kb on + strand, within Shewana3_0279 at 313.435 kb on + strand, within Shewana3_0279 at 313.511 kb on + strand, within Shewana3_0279 at 313.553 kb on + strand, within Shewana3_0279 at 313.621 kb on + strand at 313.680 kb on - strand at 313.798 kb on + strand, within Shewana3_0280 at 313.798 kb on + strand, within Shewana3_0280 at 313.798 kb on + strand, within Shewana3_0280 at 313.806 kb on - strand, within Shewana3_0280 at 313.984 kb on + strand, within Shewana3_0280 at 313.992 kb on - strand, within Shewana3_0280 at 313.992 kb on - strand, within Shewana3_0280 at 313.992 kb on - strand, within Shewana3_0280 at 314.025 kb on + strand, within Shewana3_0280 at 314.041 kb on - strand, within Shewana3_0280 at 314.181 kb on + strand, within Shewana3_0280 at 314.372 kb on - strand, within Shewana3_0280 at 314.568 kb on - strand, within Shewana3_0280 at 314.666 kb on + strand at 314.959 kb on + strand at 315.063 kb on - strand at 315.149 kb on + strand, within Shewana3_0281 at 315.377 kb on + strand, within Shewana3_0281 at 315.568 kb on + strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.600 kb on - strand at 315.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 312,783 + Shewana3_0278 0.79 +0.5 312,797 - Shewana3_0278 0.80 +0.2 312,939 - -0.6 312,954 + -0.6 312,954 + +0.1 313,078 + Shewana3_0279 0.17 +0.3 313,078 + Shewana3_0279 0.17 +0.1 313,085 + Shewana3_0279 0.18 +0.0 313,086 - Shewana3_0279 0.18 -0.8 313,086 - Shewana3_0279 0.18 -0.0 313,086 - Shewana3_0279 0.18 -0.9 313,086 - Shewana3_0279 0.18 -1.2 313,178 - Shewana3_0279 0.32 -1.1 313,302 + Shewana3_0279 0.50 -0.3 313,302 + Shewana3_0279 0.50 -1.2 313,435 + Shewana3_0279 0.69 +0.3 313,511 + Shewana3_0279 0.81 -1.0 313,553 + Shewana3_0279 0.87 +0.1 313,621 + -0.4 313,680 - -3.0 313,798 + Shewana3_0280 0.16 -0.1 313,798 + Shewana3_0280 0.16 -0.1 313,798 + Shewana3_0280 0.16 -0.5 313,806 - Shewana3_0280 0.17 -2.6 313,984 + Shewana3_0280 0.33 -0.5 313,992 - Shewana3_0280 0.33 +0.1 313,992 - Shewana3_0280 0.33 -1.2 313,992 - Shewana3_0280 0.33 -1.0 314,025 + Shewana3_0280 0.36 -0.3 314,041 - Shewana3_0280 0.38 -1.7 314,181 + Shewana3_0280 0.51 +0.3 314,372 - Shewana3_0280 0.68 -0.4 314,568 - Shewana3_0280 0.86 -0.8 314,666 + -0.0 314,959 + +0.1 315,063 - -1.0 315,149 + Shewana3_0281 0.19 +0.4 315,377 + Shewana3_0281 0.62 +0.1 315,568 + -0.1 315,576 - -0.7 315,576 - -0.2 315,576 - -1.8 315,576 - -2.1 315,600 - -3.9 315,605 - -0.8
Or see this region's nucleotide sequence