Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0269 and Shewana3_0270 are separated by 117 nucleotides Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides Shewana3_0271 and Shewana3_0272 are separated by 81 nucleotides
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471
_0272
Position (kb) 305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 304.149 kb on + strand at 304.149 kb on + strand at 304.157 kb on - strand at 304.272 kb on - strand at 304.352 kb on + strand at 304.536 kb on + strand, within Shewana3_0270 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand at 305.437 kb on - strand, within Shewana3_0271 at 305.554 kb on - strand at 305.608 kb on + strand at 305.688 kb on - strand at 305.758 kb on + strand, within Shewana3_0272 at 305.758 kb on + strand, within Shewana3_0272 at 305.837 kb on + strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.929 kb on + strand, within Shewana3_0272 at 305.974 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.255 kb on - strand, within Shewana3_0272 at 306.377 kb on - strand, within Shewana3_0272
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 304,149 + +0.5 304,149 + +0.4 304,157 - -1.6 304,272 - -1.1 304,352 + +0.1 304,536 + Shewana3_0270 0.22 -0.6 304,603 - Shewana3_0270 0.31 -1.4 304,795 - Shewana3_0270 0.59 -0.0 304,804 + Shewana3_0270 0.60 -0.3 304,880 - Shewana3_0270 0.71 +0.7 304,880 - Shewana3_0270 0.71 -0.8 305,104 - -0.8 305,437 - Shewana3_0271 0.90 -3.3 305,554 - +0.8 305,608 + -0.0 305,688 - +0.4 305,758 + Shewana3_0272 0.11 -0.6 305,758 + Shewana3_0272 0.11 -0.8 305,837 + Shewana3_0272 0.15 -0.4 305,845 - Shewana3_0272 0.15 +0.5 305,845 - Shewana3_0272 0.15 +0.5 305,845 - Shewana3_0272 0.15 +0.5 305,929 + Shewana3_0272 0.20 -0.6 305,974 - Shewana3_0272 0.22 +0.9 306,085 - Shewana3_0272 0.28 +0.4 306,085 - Shewana3_0272 0.28 +0.6 306,085 - Shewana3_0272 0.28 +0.8 306,255 - Shewana3_0272 0.37 +0.0 306,377 - Shewana3_0272 0.43 +0.2
Or see this region's nucleotide sequence