Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0264

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0262 and Shewana3_0263 are separated by 116 nucleotidesShewana3_0263 and Shewana3_0264 are separated by 311 nucleotidesShewana3_0264 and Shewana3_0265 are separated by 113 nucleotides Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363 _0262 Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791 _0263 Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058 _0264 Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271 _0265 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -2 -1 0 1at 294.130 kb on - strand, within Shewana3_0262at 294.169 kb on - strand, within Shewana3_0262at 294.169 kb on - strand, within Shewana3_0262at 294.191 kb on - strand, within Shewana3_0262at 294.279 kb on - strand, within Shewana3_0262at 294.642 kb on - strand, within Shewana3_0263at 294.648 kb on - strand, within Shewana3_0263at 294.718 kb on - strand, within Shewana3_0263at 295.258 kb on + strandat 295.258 kb on + strandat 295.298 kb on - strandat 295.331 kb on + strand, within Shewana3_0264at 295.458 kb on + strand, within Shewana3_0264at 295.458 kb on + strand, within Shewana3_0264at 295.463 kb on + strand, within Shewana3_0264at 295.471 kb on + strand, within Shewana3_0264at 295.498 kb on + strand, within Shewana3_0264at 295.526 kb on + strand, within Shewana3_0264at 295.614 kb on + strand, within Shewana3_0264at 295.622 kb on - strand, within Shewana3_0264at 295.645 kb on + strand, within Shewana3_0264at 295.749 kb on + strand, within Shewana3_0264at 296.115 kb on + strand, within Shewana3_0264at 296.115 kb on + strand, within Shewana3_0264at 296.115 kb on + strand, within Shewana3_0264at 296.248 kb on + strand, within Shewana3_0264at 296.364 kb on - strand, within Shewana3_0264at 296.367 kb on + strand, within Shewana3_0264at 296.418 kb on + strand, within Shewana3_0264at 296.688 kb on + strand, within Shewana3_0264at 296.730 kb on + strand, within Shewana3_0264at 296.769 kb on - strand, within Shewana3_0264at 296.788 kb on + strand, within Shewana3_0264at 296.788 kb on + strand, within Shewana3_0264at 296.857 kb on + strand, within Shewana3_0264at 296.858 kb on + strand, within Shewana3_0264at 296.924 kb on + strandat 296.924 kb on + strandat 297.013 kb on - strandat 297.052 kb on + strandat 297.369 kb on - strandat 297.380 kb on + strandat 297.380 kb on + strandat 297.388 kb on - strand, within Shewana3_0265at 297.388 kb on - strand, within Shewana3_0265at 297.453 kb on - strand, within Shewana3_0265at 297.482 kb on + strand, within Shewana3_0265at 297.482 kb on - strand, within Shewana3_0265at 297.511 kb on - strand, within Shewana3_0265at 297.628 kb on + strand, within Shewana3_0265at 297.637 kb on - strand, within Shewana3_0265at 297.659 kb on + strand, within Shewana3_0265at 297.723 kb on - strand, within Shewana3_0265at 297.726 kb on + strand, within Shewana3_0265at 297.774 kb on - strand, within Shewana3_0265at 297.847 kb on - strand, within Shewana3_0265at 297.901 kb on - strand, within Shewana3_0265at 297.903 kb on + strand, within Shewana3_0265at 297.911 kb on - strand, within Shewana3_0265at 297.921 kb on + strand, within Shewana3_0265at 298.045 kb on - strand, within Shewana3_0265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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294,130 - Shewana3_0262 0.61 +0.0
294,169 - Shewana3_0262 0.67 +0.5
294,169 - Shewana3_0262 0.67 +0.2
294,191 - Shewana3_0262 0.71 +0.3
294,279 - Shewana3_0262 0.86 +0.2
294,642 - Shewana3_0263 0.52 +0.1
294,648 - Shewana3_0263 0.54 +0.1
294,718 - Shewana3_0263 0.76 +0.6
295,258 + +0.7
295,258 + +0.4
295,298 - -2.3
295,331 + Shewana3_0264 0.12 -0.2
295,458 + Shewana3_0264 0.18 -0.0
295,458 + Shewana3_0264 0.18 +0.1
295,463 + Shewana3_0264 0.18 -0.3
295,471 + Shewana3_0264 0.19 +0.1
295,498 + Shewana3_0264 0.20 -0.2
295,526 + Shewana3_0264 0.22 +0.4
295,614 + Shewana3_0264 0.26 +0.0
295,622 - Shewana3_0264 0.27 +0.2
295,645 + Shewana3_0264 0.28 -0.8
295,749 + Shewana3_0264 0.33 +0.4
296,115 + Shewana3_0264 0.52 +0.2
296,115 + Shewana3_0264 0.52 +0.2
296,115 + Shewana3_0264 0.52 +0.9
296,248 + Shewana3_0264 0.59 +0.2
296,364 - Shewana3_0264 0.64 -0.3
296,367 + Shewana3_0264 0.65 -0.7
296,418 + Shewana3_0264 0.67 +0.5
296,688 + Shewana3_0264 0.81 -0.3
296,730 + Shewana3_0264 0.83 -0.1
296,769 - Shewana3_0264 0.85 -0.6
296,788 + Shewana3_0264 0.86 -0.1
296,788 + Shewana3_0264 0.86 -0.2
296,857 + Shewana3_0264 0.90 +0.1
296,858 + Shewana3_0264 0.90 +0.7
296,924 + +0.0
296,924 + -0.1
297,013 - +0.1
297,052 + -0.9
297,369 - +0.2
297,380 + +0.3
297,380 + -0.4
297,388 - Shewana3_0265 0.10 +0.1
297,388 - Shewana3_0265 0.10 +0.5
297,453 - Shewana3_0265 0.13 +0.5
297,482 + Shewana3_0265 0.15 -0.2
297,482 - Shewana3_0265 0.15 -0.8
297,511 - Shewana3_0265 0.16 +0.4
297,628 + Shewana3_0265 0.22 -0.6
297,637 - Shewana3_0265 0.22 -1.9
297,659 + Shewana3_0265 0.23 -1.1
297,723 - Shewana3_0265 0.26 +0.2
297,726 + Shewana3_0265 0.26 +0.4
297,774 - Shewana3_0265 0.29 -0.1
297,847 - Shewana3_0265 0.32 -2.5
297,901 - Shewana3_0265 0.35 -2.5
297,903 + Shewana3_0265 0.35 -0.0
297,911 - Shewana3_0265 0.35 -0.1
297,921 + Shewana3_0265 0.36 +0.2
298,045 - Shewana3_0265 0.42 +0.2

Or see this region's nucleotide sequence