Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0251 and Shewana3_0252 are separated by 58 nucleotides Shewana3_0252 and Shewana3_0253 are separated by 14 nucleotides
Shewana3_0251: Shewana3_0251 - Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq), at 282,029 to 283,915
_0251
Shewana3_0252: Shewana3_0252 - ATPase domain-containing protein (RefSeq), at 283,974 to 285,323
_0252
Shewana3_0253: Shewana3_0253 - two component transcriptional regulator (RefSeq), at 285,338 to 286,024
_0253
Position (kb) 283
284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 283.084 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.107 kb on - strand, within Shewana3_0251 at 283.266 kb on + strand, within Shewana3_0251 at 283.388 kb on + strand, within Shewana3_0251 at 283.532 kb on - strand, within Shewana3_0251 at 283.775 kb on - strand at 284.267 kb on - strand, within Shewana3_0252 at 284.813 kb on - strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.835 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.883 kb on - strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.016 kb on - strand, within Shewana3_0252 at 285.043 kb on + strand, within Shewana3_0252 at 285.051 kb on - strand, within Shewana3_0252 at 285.498 kb on - strand, within Shewana3_0253 at 285.794 kb on + strand, within Shewana3_0253 at 285.863 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.927 kb on + strand, within Shewana3_0253 at 285.943 kb on + strand, within Shewana3_0253 at 286.049 kb on + strand at 286.058 kb on + strand at 286.125 kb on + strand at 286.195 kb on - strand at 286.226 kb on - strand at 286.282 kb on - strand at 286.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 283,084 + Shewana3_0251 0.56 +0.2 283,084 + Shewana3_0251 0.56 +0.2 283,092 - Shewana3_0251 0.56 +0.0 283,092 - Shewana3_0251 0.56 +0.5 283,092 - Shewana3_0251 0.56 +0.5 283,107 - Shewana3_0251 0.57 +0.3 283,266 + Shewana3_0251 0.66 -0.1 283,388 + Shewana3_0251 0.72 -0.1 283,532 - Shewana3_0251 0.80 -0.2 283,775 - -1.2 284,267 - Shewana3_0252 0.22 +0.0 284,813 - Shewana3_0252 0.62 -0.4 284,831 + Shewana3_0252 0.63 -0.1 284,831 + Shewana3_0252 0.63 -0.8 284,831 + Shewana3_0252 0.63 +0.0 284,835 - Shewana3_0252 0.64 -0.7 284,839 - Shewana3_0252 0.64 -0.3 284,839 - Shewana3_0252 0.64 +0.1 284,883 - Shewana3_0252 0.67 -1.7 285,008 + Shewana3_0252 0.77 +0.2 285,008 + Shewana3_0252 0.77 +0.0 285,016 - Shewana3_0252 0.77 -1.3 285,043 + Shewana3_0252 0.79 -0.7 285,051 - Shewana3_0252 0.80 -0.9 285,498 - Shewana3_0253 0.23 -1.6 285,794 + Shewana3_0253 0.66 -0.7 285,863 + Shewana3_0253 0.76 -2.9 285,907 + Shewana3_0253 0.83 -0.9 285,907 + Shewana3_0253 0.83 -0.9 285,907 + Shewana3_0253 0.83 -0.7 285,915 - Shewana3_0253 0.84 -0.8 285,915 - Shewana3_0253 0.84 +0.5 285,915 - Shewana3_0253 0.84 -1.0 285,915 - Shewana3_0253 0.84 -0.2 285,927 + Shewana3_0253 0.86 -0.8 285,943 + Shewana3_0253 0.88 -1.5 286,049 + -0.4 286,058 + -1.0 286,125 + -0.5 286,195 - -0.1 286,226 - -0.1 286,282 - -0.6 286,286 + +0.0
Or see this region's nucleotide sequence