Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0250 and Shewana3_0251 are separated by 342 nucleotides Shewana3_0251 and Shewana3_0252 are separated by 58 nucleotides
Shewana3_0250: Shewana3_0250 - aldehyde dehydrogenase (RefSeq), at 280,166 to 281,686
_0250
Shewana3_0251: Shewana3_0251 - Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq), at 282,029 to 283,915
_0251
Shewana3_0252: Shewana3_0252 - ATPase domain-containing protein (RefSeq), at 283,974 to 285,323
_0252
Position (kb) 282
283
284 Strain fitness (log2 ratio) -1
0
1 at 281.128 kb on + strand, within Shewana3_0250 at 281.220 kb on + strand, within Shewana3_0250 at 281.276 kb on + strand, within Shewana3_0250 at 281.369 kb on - strand, within Shewana3_0250 at 281.432 kb on - strand, within Shewana3_0250 at 281.765 kb on - strand at 281.888 kb on - strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.102 kb on + strand at 282.102 kb on + strand at 282.125 kb on - strand at 282.388 kb on + strand, within Shewana3_0251 at 282.576 kb on + strand, within Shewana3_0251 at 282.584 kb on - strand, within Shewana3_0251 at 282.615 kb on - strand, within Shewana3_0251 at 282.622 kb on + strand, within Shewana3_0251 at 282.630 kb on - strand, within Shewana3_0251 at 282.786 kb on + strand, within Shewana3_0251 at 282.914 kb on + strand, within Shewana3_0251 at 282.914 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.107 kb on - strand, within Shewana3_0251 at 283.266 kb on + strand, within Shewana3_0251 at 283.388 kb on + strand, within Shewana3_0251 at 283.532 kb on - strand, within Shewana3_0251 at 283.775 kb on - strand at 284.267 kb on - strand, within Shewana3_0252 at 284.813 kb on - strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.835 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.883 kb on - strand, within Shewana3_0252
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 281,128 + Shewana3_0250 0.63 -0.0 281,220 + Shewana3_0250 0.69 +0.3 281,276 + Shewana3_0250 0.73 -0.2 281,369 - Shewana3_0250 0.79 -0.5 281,432 - Shewana3_0250 0.83 +0.1 281,765 - +0.5 281,888 - +0.4 282,011 + +0.4 282,011 + -0.5 282,011 + -0.8 282,102 + -1.5 282,102 + -0.9 282,125 - -0.3 282,388 + Shewana3_0251 0.19 +0.3 282,576 + Shewana3_0251 0.29 -0.1 282,584 - Shewana3_0251 0.29 +0.2 282,615 - Shewana3_0251 0.31 -0.6 282,622 + Shewana3_0251 0.31 +1.0 282,630 - Shewana3_0251 0.32 +0.1 282,786 + Shewana3_0251 0.40 +0.2 282,914 + Shewana3_0251 0.47 -0.0 282,914 + Shewana3_0251 0.47 -0.2 283,084 + Shewana3_0251 0.56 +0.2 283,084 + Shewana3_0251 0.56 +0.2 283,092 - Shewana3_0251 0.56 +0.0 283,092 - Shewana3_0251 0.56 +0.5 283,092 - Shewana3_0251 0.56 +0.5 283,107 - Shewana3_0251 0.57 +0.3 283,266 + Shewana3_0251 0.66 -0.1 283,388 + Shewana3_0251 0.72 -0.1 283,532 - Shewana3_0251 0.80 -0.2 283,775 - -1.2 284,267 - Shewana3_0252 0.22 +0.0 284,813 - Shewana3_0252 0.62 -0.4 284,831 + Shewana3_0252 0.63 -0.1 284,831 + Shewana3_0252 0.63 -0.8 284,831 + Shewana3_0252 0.63 +0.0 284,835 - Shewana3_0252 0.64 -0.7 284,839 - Shewana3_0252 0.64 -0.3 284,839 - Shewana3_0252 0.64 +0.1 284,883 - Shewana3_0252 0.67 -1.7
Or see this region's nucleotide sequence