Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0140 and Shewana3_0141 are separated by 130 nucleotides Shewana3_0141 and Shewana3_0142 are separated by 263 nucleotides
Shewana3_0140: Shewana3_0140 - peptidase M14, carboxypeptidase A (RefSeq), at 159,615 to 161,594
_0140
Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843
_0141
Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336
_0142
Position (kb)
161
162
163 Strain fitness (log2 ratio)
-2
-1
0
1 at 160.751 kb on + strand, within Shewana3_0140 at 161.219 kb on + strand, within Shewana3_0140 at 161.286 kb on + strand, within Shewana3_0140 at 161.433 kb on + strand at 161.433 kb on + strand at 161.493 kb on - strand at 161.678 kb on - strand at 161.726 kb on + strand at 161.795 kb on + strand at 161.847 kb on - strand, within Shewana3_0141 at 161.938 kb on + strand, within Shewana3_0141 at 162.327 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.526 kb on - strand, within Shewana3_0141 at 162.589 kb on + strand, within Shewana3_0141 at 162.855 kb on + strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.874 kb on - strand at 162.955 kb on + strand at 162.959 kb on + strand at 162.960 kb on + strand at 163.037 kb on + strand at 163.073 kb on + strand at 163.214 kb on - strand at 163.366 kb on + strand, within Shewana3_0142 at 163.374 kb on - strand, within Shewana3_0142 at 163.456 kb on - strand, within Shewana3_0142 at 163.532 kb on - strand, within Shewana3_0142 at 163.690 kb on - strand, within Shewana3_0142 at 163.754 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.842 kb on + strand, within Shewana3_0142
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 160,751 + Shewana3_0140 0.57 -0.9 161,219 + Shewana3_0140 0.81 +0.1 161,286 + Shewana3_0140 0.84 -0.6 161,433 + -0.2 161,433 + -0.9 161,493 - -0.5 161,678 - +0.0 161,726 + -0.6 161,795 + -0.2 161,847 - Shewana3_0141 0.11 +0.1 161,938 + Shewana3_0141 0.19 -0.9 162,327 + Shewana3_0141 0.54 +0.5 162,426 + Shewana3_0141 0.63 -2.5 162,426 + Shewana3_0141 0.63 -1.3 162,426 + Shewana3_0141 0.63 -1.9 162,434 - Shewana3_0141 0.63 -1.3 162,434 - Shewana3_0141 0.63 +0.3 162,526 - Shewana3_0141 0.72 +0.3 162,589 + Shewana3_0141 0.77 -0.0 162,855 + +0.1 162,863 - -0.6 162,863 - -0.1 162,863 - -0.8 162,874 - -0.3 162,955 + +0.5 162,959 + -0.3 162,960 + -0.6 163,037 + +0.3 163,073 + +0.1 163,214 - +0.5 163,366 + Shewana3_0142 0.21 -1.3 163,374 - Shewana3_0142 0.22 +0.6 163,456 - Shewana3_0142 0.28 +0.7 163,532 - Shewana3_0142 0.35 +0.7 163,690 - Shewana3_0142 0.47 +0.6 163,754 + Shewana3_0142 0.53 -0.5 163,831 + Shewana3_0142 0.59 -0.1 163,831 + Shewana3_0142 0.59 -1.5 163,831 + Shewana3_0142 0.59 -1.9 163,839 - Shewana3_0142 0.60 +0.3 163,839 - Shewana3_0142 0.60 +0.3 163,839 - Shewana3_0142 0.60 +0.2 163,842 + Shewana3_0142 0.60 -1.3
Or see this region's nucleotide sequence