Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0115 and Shewana3_0116 are separated by 197 nucleotides Shewana3_0116 and Shewana3_0117 are separated by 233 nucleotides Shewana3_0117 and Shewana3_0118 are separated by 1 nucleotides Shewana3_0118 and Shewana3_0119 are separated by 25 nucleotides
Shewana3_0115: Shewana3_0115 - hypothetical protein (RefSeq), at 131,341 to 131,982
_0115
Shewana3_0116: Shewana3_0116 - hypothetical protein (RefSeq), at 132,180 to 132,563
_0116
Shewana3_0117: Shewana3_0117 - MscS mechanosensitive ion channel (RefSeq), at 132,797 to 134,065
_0117
Shewana3_0118: Shewana3_0118 - lysine exporter protein LysE/YggA (RefSeq), at 134,067 to 134,690
_0118
Shewana3_0119: Shewana3_0119 - phospholipid/glycerol acyltransferase (RefSeq), at 134,716 to 135,276
_0119
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 131.870 kb on + strand, within Shewana3_0115 at 131.878 kb on - strand, within Shewana3_0115 at 131.889 kb on + strand, within Shewana3_0115 at 131.897 kb on - strand, within Shewana3_0115 at 131.903 kb on - strand, within Shewana3_0115 at 131.951 kb on - strand at 132.100 kb on + strand at 132.163 kb on + strand at 132.176 kb on + strand at 132.183 kb on - strand at 132.222 kb on + strand, within Shewana3_0116 at 132.247 kb on - strand, within Shewana3_0116 at 132.297 kb on - strand, within Shewana3_0116 at 132.299 kb on + strand, within Shewana3_0116 at 132.334 kb on + strand, within Shewana3_0116 at 132.334 kb on + strand, within Shewana3_0116 at 132.342 kb on - strand, within Shewana3_0116 at 132.368 kb on + strand, within Shewana3_0116 at 132.383 kb on + strand, within Shewana3_0116 at 132.518 kb on + strand, within Shewana3_0116 at 132.526 kb on - strand at 132.526 kb on - strand at 132.558 kb on - strand at 132.637 kb on - strand at 132.697 kb on + strand at 132.737 kb on - strand at 132.752 kb on + strand at 132.890 kb on - strand at 133.008 kb on + strand, within Shewana3_0117 at 133.090 kb on - strand, within Shewana3_0117 at 133.094 kb on + strand, within Shewana3_0117 at 133.104 kb on + strand, within Shewana3_0117 at 133.104 kb on - strand, within Shewana3_0117 at 133.112 kb on - strand, within Shewana3_0117 at 133.326 kb on + strand, within Shewana3_0117 at 133.334 kb on - strand, within Shewana3_0117 at 133.470 kb on - strand, within Shewana3_0117 at 133.734 kb on - strand, within Shewana3_0117 at 134.087 kb on - strand at 134.097 kb on + strand at 134.193 kb on - strand, within Shewana3_0118 at 134.216 kb on + strand, within Shewana3_0118 at 134.307 kb on + strand, within Shewana3_0118 at 134.307 kb on + strand, within Shewana3_0118 at 134.315 kb on - strand, within Shewana3_0118 at 134.316 kb on - strand, within Shewana3_0118 at 134.564 kb on - strand, within Shewana3_0118 at 134.564 kb on - strand, within Shewana3_0118 at 134.564 kb on - strand, within Shewana3_0118 at 134.569 kb on - strand, within Shewana3_0118 at 134.766 kb on + strand at 134.774 kb on - strand, within Shewana3_0119 at 134.774 kb on - strand, within Shewana3_0119
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 131,870 + Shewana3_0115 0.82 -0.4 131,878 - Shewana3_0115 0.84 +0.3 131,889 + Shewana3_0115 0.85 +0.3 131,897 - Shewana3_0115 0.87 +0.0 131,903 - Shewana3_0115 0.88 -0.4 131,951 - -0.9 132,100 + +0.4 132,163 + +0.4 132,176 + +0.2 132,183 - -0.1 132,222 + Shewana3_0116 0.11 -0.3 132,247 - Shewana3_0116 0.17 -0.3 132,297 - Shewana3_0116 0.30 -0.8 132,299 + Shewana3_0116 0.31 -0.2 132,334 + Shewana3_0116 0.40 +0.6 132,334 + Shewana3_0116 0.40 -0.5 132,342 - Shewana3_0116 0.42 -0.4 132,368 + Shewana3_0116 0.49 +0.4 132,383 + Shewana3_0116 0.53 -0.1 132,518 + Shewana3_0116 0.88 +0.3 132,526 - -1.3 132,526 - -0.4 132,558 - -1.5 132,637 - -0.6 132,697 + -0.8 132,737 - -0.5 132,752 + -0.4 132,890 - -0.7 133,008 + Shewana3_0117 0.17 -0.2 133,090 - Shewana3_0117 0.23 -1.9 133,094 + Shewana3_0117 0.23 -0.0 133,104 + Shewana3_0117 0.24 -0.2 133,104 - Shewana3_0117 0.24 -0.2 133,112 - Shewana3_0117 0.25 -1.8 133,326 + Shewana3_0117 0.42 +0.1 133,334 - Shewana3_0117 0.42 -2.3 133,470 - Shewana3_0117 0.53 -0.2 133,734 - Shewana3_0117 0.74 -0.8 134,087 - +0.0 134,097 + +0.0 134,193 - Shewana3_0118 0.20 +0.5 134,216 + Shewana3_0118 0.24 -0.7 134,307 + Shewana3_0118 0.38 -2.5 134,307 + Shewana3_0118 0.38 -0.9 134,315 - Shewana3_0118 0.40 -1.7 134,316 - Shewana3_0118 0.40 -1.6 134,564 - Shewana3_0118 0.80 +0.2 134,564 - Shewana3_0118 0.80 +0.1 134,564 - Shewana3_0118 0.80 +0.4 134,569 - Shewana3_0118 0.80 -0.3 134,766 + -0.8 134,774 - Shewana3_0119 0.10 -0.3 134,774 - Shewana3_0119 0.10 +0.4
Or see this region's nucleotide sequence