Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0109

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0108 and Shewana3_0109 are separated by 124 nucleotidesShewana3_0109 and Shewana3_0110 overlap by 1 nucleotidesShewana3_0110 and Shewana3_0111 are separated by 65 nucleotides Shewana3_0108: Shewana3_0108 - formate dehydrogenase accessory protein (RefSeq), at 124,669 to 125,505 _0108 Shewana3_0109: Shewana3_0109 - putative inner membrane protein (RefSeq), at 125,630 to 126,844 _0109 Shewana3_0110: Shewana3_0110 - hypothetical protein (RefSeq), at 126,844 to 127,077 _0110 Shewana3_0111: Shewana3_0111 - peptidase M48, Ste24p (RefSeq), at 127,143 to 128,486 _0111 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 124.716 kb on - strandat 124.723 kb on - strandat 124.794 kb on + strand, within Shewana3_0108at 124.810 kb on - strand, within Shewana3_0108at 125.047 kb on + strand, within Shewana3_0108at 125.097 kb on + strand, within Shewana3_0108at 125.102 kb on + strand, within Shewana3_0108at 125.102 kb on + strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.112 kb on + strand, within Shewana3_0108at 125.140 kb on - strand, within Shewana3_0108at 125.140 kb on - strand, within Shewana3_0108at 125.256 kb on + strand, within Shewana3_0108at 125.289 kb on - strand, within Shewana3_0108at 125.289 kb on - strand, within Shewana3_0108at 125.314 kb on + strand, within Shewana3_0108at 125.707 kb on + strandat 125.731 kb on + strandat 125.852 kb on + strand, within Shewana3_0109at 125.852 kb on + strand, within Shewana3_0109at 125.852 kb on + strand, within Shewana3_0109at 125.852 kb on + strand, within Shewana3_0109at 125.860 kb on - strand, within Shewana3_0109at 125.860 kb on - strand, within Shewana3_0109at 125.945 kb on + strand, within Shewana3_0109at 125.953 kb on - strand, within Shewana3_0109at 125.960 kb on - strand, within Shewana3_0109at 126.035 kb on + strand, within Shewana3_0109at 126.131 kb on - strand, within Shewana3_0109at 126.245 kb on + strand, within Shewana3_0109at 126.299 kb on + strand, within Shewana3_0109at 126.300 kb on - strand, within Shewana3_0109at 126.312 kb on - strand, within Shewana3_0109at 126.358 kb on - strand, within Shewana3_0109at 126.590 kb on + strand, within Shewana3_0109at 126.608 kb on + strand, within Shewana3_0109at 126.627 kb on + strand, within Shewana3_0109at 126.698 kb on - strand, within Shewana3_0109at 126.698 kb on - strand, within Shewana3_0109at 126.888 kb on + strand, within Shewana3_0110at 126.895 kb on - strand, within Shewana3_0110at 126.915 kb on + strand, within Shewana3_0110at 127.244 kb on + strandat 127.264 kb on + strandat 127.310 kb on + strand, within Shewana3_0111at 127.310 kb on + strand, within Shewana3_0111at 127.318 kb on - strand, within Shewana3_0111at 127.318 kb on - strand, within Shewana3_0111at 127.349 kb on + strand, within Shewana3_0111at 127.349 kb on + strand, within Shewana3_0111at 127.357 kb on - strand, within Shewana3_0111at 127.377 kb on - strand, within Shewana3_0111at 127.389 kb on - strand, within Shewana3_0111at 127.666 kb on - strand, within Shewana3_0111at 127.721 kb on + strand, within Shewana3_0111at 127.756 kb on - strand, within Shewana3_0111at 127.767 kb on - strand, within Shewana3_0111at 127.807 kb on - strand, within Shewana3_0111

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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124,716 - -1.7
124,723 - -0.9
124,794 + Shewana3_0108 0.15 +0.7
124,810 - Shewana3_0108 0.17 -0.8
125,047 + Shewana3_0108 0.45 -0.2
125,097 + Shewana3_0108 0.51 -0.1
125,102 + Shewana3_0108 0.52 -0.1
125,102 + Shewana3_0108 0.52 +0.2
125,110 - Shewana3_0108 0.53 -0.6
125,110 - Shewana3_0108 0.53 -0.2
125,110 - Shewana3_0108 0.53 -1.6
125,112 + Shewana3_0108 0.53 -0.1
125,140 - Shewana3_0108 0.56 -1.4
125,140 - Shewana3_0108 0.56 -1.9
125,256 + Shewana3_0108 0.70 +0.5
125,289 - Shewana3_0108 0.74 -1.4
125,289 - Shewana3_0108 0.74 -1.3
125,314 + Shewana3_0108 0.77 -1.4
125,707 + -0.0
125,731 + +0.3
125,852 + Shewana3_0109 0.18 +0.6
125,852 + Shewana3_0109 0.18 -0.3
125,852 + Shewana3_0109 0.18 +0.0
125,852 + Shewana3_0109 0.18 +0.3
125,860 - Shewana3_0109 0.19 -1.7
125,860 - Shewana3_0109 0.19 -0.4
125,945 + Shewana3_0109 0.26 +0.2
125,953 - Shewana3_0109 0.27 -0.6
125,960 - Shewana3_0109 0.27 +0.4
126,035 + Shewana3_0109 0.33 +0.2
126,131 - Shewana3_0109 0.41 -0.6
126,245 + Shewana3_0109 0.51 +0.2
126,299 + Shewana3_0109 0.55 +0.3
126,300 - Shewana3_0109 0.55 -0.4
126,312 - Shewana3_0109 0.56 -0.8
126,358 - Shewana3_0109 0.60 -0.3
126,590 + Shewana3_0109 0.79 +0.1
126,608 + Shewana3_0109 0.80 -0.2
126,627 + Shewana3_0109 0.82 -0.0
126,698 - Shewana3_0109 0.88 -2.7
126,698 - Shewana3_0109 0.88 -1.9
126,888 + Shewana3_0110 0.19 +0.7
126,895 - Shewana3_0110 0.22 -2.4
126,915 + Shewana3_0110 0.30 +0.3
127,244 + -0.3
127,264 + -0.7
127,310 + Shewana3_0111 0.12 +0.2
127,310 + Shewana3_0111 0.12 +0.7
127,318 - Shewana3_0111 0.13 +0.3
127,318 - Shewana3_0111 0.13 +0.5
127,349 + Shewana3_0111 0.15 +0.7
127,349 + Shewana3_0111 0.15 +0.8
127,357 - Shewana3_0111 0.16 +0.7
127,377 - Shewana3_0111 0.17 +0.7
127,389 - Shewana3_0111 0.18 +0.6
127,666 - Shewana3_0111 0.39 +0.5
127,721 + Shewana3_0111 0.43 -0.5
127,756 - Shewana3_0111 0.46 +0.7
127,767 - Shewana3_0111 0.46 +0.3
127,807 - Shewana3_0111 0.49 -0.1

Or see this region's nucleotide sequence