Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0095 and Shewana3_0096 are separated by 269 nucleotides Shewana3_0096 and Shewana3_0097 are separated by 35 nucleotides Shewana3_0097 and Shewana3_0098 are separated by 703 nucleotides
Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278
_0095
Shewana3_0096: Shewana3_0096 - MarR family transcriptional regulator (RefSeq), at 107,548 to 107,976
_0096
Shewana3_0097: Shewana3_0097 - FAD-binding 9, siderophore-interacting domain-containing protein (RefSeq), at 108,012 to 108,758
_0097
Shewana3_0098: Shewana3_0098 - imidazolonepropionase (RefSeq), at 109,462 to 110,688
_0098
Position (kb)
108
109 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 107.060 kb on - strand, within Shewana3_0095 at 107.068 kb on + strand, within Shewana3_0095 at 107.076 kb on - strand, within Shewana3_0095 at 107.111 kb on - strand at 107.111 kb on - strand at 107.166 kb on + strand at 107.174 kb on - strand at 107.197 kb on + strand at 107.203 kb on + strand at 107.330 kb on - strand at 107.572 kb on + strand at 107.582 kb on + strand at 107.582 kb on + strand at 107.582 kb on + strand at 107.582 kb on + strand at 107.693 kb on - strand, within Shewana3_0096 at 107.759 kb on + strand, within Shewana3_0096 at 107.838 kb on + strand, within Shewana3_0096 at 107.987 kb on + strand at 108.027 kb on - strand at 108.027 kb on - strand at 108.075 kb on - strand at 108.158 kb on + strand, within Shewana3_0097 at 108.166 kb on - strand, within Shewana3_0097 at 108.187 kb on + strand, within Shewana3_0097 at 108.425 kb on + strand, within Shewana3_0097 at 108.433 kb on - strand, within Shewana3_0097 at 108.433 kb on - strand, within Shewana3_0097 at 108.470 kb on - strand, within Shewana3_0097 at 108.531 kb on + strand, within Shewana3_0097 at 108.538 kb on - strand, within Shewana3_0097 at 108.584 kb on - strand, within Shewana3_0097 at 108.653 kb on - strand, within Shewana3_0097 at 108.762 kb on - strand at 108.816 kb on + strand at 108.826 kb on + strand at 108.826 kb on + strand at 108.834 kb on - strand at 108.834 kb on - strand at 108.834 kb on - strand at 108.850 kb on - strand at 108.894 kb on + strand at 108.894 kb on + strand at 108.901 kb on + strand at 108.902 kb on - strand at 108.902 kb on - strand at 108.909 kb on - strand at 108.936 kb on + strand at 108.936 kb on + strand at 108.936 kb on + strand at 108.944 kb on - strand at 108.944 kb on - strand at 108.944 kb on - strand at 108.946 kb on - strand at 109.039 kb on + strand at 109.047 kb on - strand at 109.047 kb on - strand at 109.065 kb on - strand at 109.065 kb on - strand at 109.071 kb on - strand at 109.071 kb on - strand at 109.075 kb on + strand at 109.075 kb on + strand at 109.083 kb on - strand at 109.086 kb on + strand at 109.132 kb on + strand at 109.132 kb on - strand at 109.252 kb on - strand at 109.288 kb on + strand at 109.298 kb on + strand at 109.305 kb on - strand at 109.305 kb on - strand at 109.305 kb on - strand at 109.305 kb on - strand at 109.305 kb on - strand at 109.306 kb on - strand at 109.358 kb on + strand at 109.404 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.413 kb on + strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.421 kb on - strand at 109.442 kb on - strand at 109.496 kb on + strand at 109.533 kb on + strand at 109.541 kb on - strand at 109.581 kb on + strand at 109.690 kb on - strand, within Shewana3_0098 at 109.711 kb on + strand, within Shewana3_0098
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 107,060 - Shewana3_0095 0.89 +0.1 107,068 + Shewana3_0095 0.89 -0.6 107,076 - Shewana3_0095 0.89 -0.1 107,111 - -0.0 107,111 - -0.2 107,166 + -0.2 107,174 - -0.1 107,197 + -2.0 107,203 + +0.1 107,330 - -0.2 107,572 + -0.4 107,582 + -0.1 107,582 + -0.0 107,582 + -1.2 107,582 + -0.0 107,693 - Shewana3_0096 0.34 -0.4 107,759 + Shewana3_0096 0.49 -1.1 107,838 + Shewana3_0096 0.68 -4.4 107,987 + +0.5 108,027 - -0.1 108,027 - +0.1 108,075 - +0.3 108,158 + Shewana3_0097 0.20 +0.4 108,166 - Shewana3_0097 0.21 -0.3 108,187 + Shewana3_0097 0.23 +0.5 108,425 + Shewana3_0097 0.55 +0.4 108,433 - Shewana3_0097 0.56 +0.2 108,433 - Shewana3_0097 0.56 -1.5 108,470 - Shewana3_0097 0.61 +0.2 108,531 + Shewana3_0097 0.69 +0.5 108,538 - Shewana3_0097 0.70 +0.2 108,584 - Shewana3_0097 0.77 -0.4 108,653 - Shewana3_0097 0.86 +0.2 108,762 - -0.6 108,816 + -1.5 108,826 + -1.2 108,826 + -0.2 108,834 - -1.2 108,834 - -1.3 108,834 - +0.3 108,850 - -0.2 108,894 + -0.4 108,894 + -1.7 108,901 + -1.4 108,902 - -2.6 108,902 - -0.5 108,909 - -1.0 108,936 + -0.6 108,936 + +0.1 108,936 + -0.7 108,944 - -0.8 108,944 - -1.3 108,944 - -1.2 108,946 - -0.8 109,039 + -1.1 109,047 - -1.3 109,047 - -0.9 109,065 - -1.8 109,065 - +0.5 109,071 - -1.7 109,071 - -3.7 109,075 + -0.4 109,075 + -0.1 109,083 - -2.2 109,086 + -1.6 109,132 + -0.9 109,132 - -2.7 109,252 - -1.0 109,288 + -0.7 109,298 + -0.1 109,305 - -1.2 109,305 - -0.5 109,305 - +0.5 109,305 - +0.4 109,305 - -0.8 109,306 - -0.8 109,358 + -0.0 109,404 + -0.2 109,413 + +0.5 109,413 + +0.6 109,413 + -1.2 109,413 + +0.1 109,413 + -0.3 109,413 + +0.8 109,413 + -1.0 109,413 + +0.2 109,413 + +0.4 109,413 + -0.0 109,413 + +0.5 109,413 + +0.3 109,413 + +0.3 109,421 - -0.4 109,421 - -0.8 109,421 - -1.5 109,421 - +0.2 109,421 - -0.4 109,421 - -0.2 109,421 - -1.4 109,421 - -2.0 109,421 - -0.9 109,442 - -0.6 109,496 + -0.2 109,533 + -0.4 109,541 - -0.3 109,581 + -1.0 109,690 - Shewana3_0098 0.19 -0.1 109,711 + Shewana3_0098 0.20 -0.6
Or see this region's nucleotide sequence