Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0097

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0095 and Shewana3_0096 are separated by 269 nucleotidesShewana3_0096 and Shewana3_0097 are separated by 35 nucleotidesShewana3_0097 and Shewana3_0098 are separated by 703 nucleotides Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278 _0095 Shewana3_0096: Shewana3_0096 - MarR family transcriptional regulator (RefSeq), at 107,548 to 107,976 _0096 Shewana3_0097: Shewana3_0097 - FAD-binding 9, siderophore-interacting domain-containing protein (RefSeq), at 108,012 to 108,758 _0097 Shewana3_0098: Shewana3_0098 - imidazolonepropionase (RefSeq), at 109,462 to 110,688 _0098 Position (kb) 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 107.060 kb on - strand, within Shewana3_0095at 107.068 kb on + strand, within Shewana3_0095at 107.076 kb on - strand, within Shewana3_0095at 107.111 kb on - strandat 107.111 kb on - strandat 107.166 kb on + strandat 107.174 kb on - strandat 107.197 kb on + strandat 107.203 kb on + strandat 107.330 kb on - strandat 107.572 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.693 kb on - strand, within Shewana3_0096at 107.759 kb on + strand, within Shewana3_0096at 107.838 kb on + strand, within Shewana3_0096at 107.987 kb on + strandat 108.027 kb on - strandat 108.027 kb on - strandat 108.075 kb on - strandat 108.158 kb on + strand, within Shewana3_0097at 108.166 kb on - strand, within Shewana3_0097at 108.187 kb on + strand, within Shewana3_0097at 108.425 kb on + strand, within Shewana3_0097at 108.433 kb on - strand, within Shewana3_0097at 108.433 kb on - strand, within Shewana3_0097at 108.470 kb on - strand, within Shewana3_0097at 108.531 kb on + strand, within Shewana3_0097at 108.538 kb on - strand, within Shewana3_0097at 108.584 kb on - strand, within Shewana3_0097at 108.653 kb on - strand, within Shewana3_0097at 108.762 kb on - strandat 108.816 kb on + strandat 108.826 kb on + strandat 108.826 kb on + strandat 108.834 kb on - strandat 108.834 kb on - strandat 108.834 kb on - strandat 108.850 kb on - strandat 108.894 kb on + strandat 108.894 kb on + strandat 108.901 kb on + strandat 108.902 kb on - strandat 108.902 kb on - strandat 108.909 kb on - strandat 108.936 kb on + strandat 108.936 kb on + strandat 108.936 kb on + strandat 108.944 kb on - strandat 108.944 kb on - strandat 108.944 kb on - strandat 108.946 kb on - strandat 109.039 kb on + strandat 109.047 kb on - strandat 109.047 kb on - strandat 109.065 kb on - strandat 109.065 kb on - strandat 109.071 kb on - strandat 109.071 kb on - strandat 109.075 kb on + strandat 109.075 kb on + strandat 109.083 kb on - strandat 109.086 kb on + strandat 109.132 kb on + strandat 109.132 kb on - strandat 109.252 kb on - strandat 109.288 kb on + strandat 109.298 kb on + strandat 109.305 kb on - strandat 109.305 kb on - strandat 109.305 kb on - strandat 109.305 kb on - strandat 109.305 kb on - strandat 109.306 kb on - strandat 109.358 kb on + strandat 109.404 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.413 kb on + strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.421 kb on - strandat 109.442 kb on - strandat 109.496 kb on + strandat 109.533 kb on + strandat 109.541 kb on - strandat 109.581 kb on + strandat 109.690 kb on - strand, within Shewana3_0098at 109.711 kb on + strand, within Shewana3_0098

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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107,060 - Shewana3_0095 0.89 +0.1
107,068 + Shewana3_0095 0.89 -0.6
107,076 - Shewana3_0095 0.89 -0.1
107,111 - -0.0
107,111 - -0.2
107,166 + -0.2
107,174 - -0.1
107,197 + -2.0
107,203 + +0.1
107,330 - -0.2
107,572 + -0.4
107,582 + -0.1
107,582 + -0.0
107,582 + -1.2
107,582 + -0.0
107,693 - Shewana3_0096 0.34 -0.4
107,759 + Shewana3_0096 0.49 -1.1
107,838 + Shewana3_0096 0.68 -4.4
107,987 + +0.5
108,027 - -0.1
108,027 - +0.1
108,075 - +0.3
108,158 + Shewana3_0097 0.20 +0.4
108,166 - Shewana3_0097 0.21 -0.3
108,187 + Shewana3_0097 0.23 +0.5
108,425 + Shewana3_0097 0.55 +0.4
108,433 - Shewana3_0097 0.56 +0.2
108,433 - Shewana3_0097 0.56 -1.5
108,470 - Shewana3_0097 0.61 +0.2
108,531 + Shewana3_0097 0.69 +0.5
108,538 - Shewana3_0097 0.70 +0.2
108,584 - Shewana3_0097 0.77 -0.4
108,653 - Shewana3_0097 0.86 +0.2
108,762 - -0.6
108,816 + -1.5
108,826 + -1.2
108,826 + -0.2
108,834 - -1.2
108,834 - -1.3
108,834 - +0.3
108,850 - -0.2
108,894 + -0.4
108,894 + -1.7
108,901 + -1.4
108,902 - -2.6
108,902 - -0.5
108,909 - -1.0
108,936 + -0.6
108,936 + +0.1
108,936 + -0.7
108,944 - -0.8
108,944 - -1.3
108,944 - -1.2
108,946 - -0.8
109,039 + -1.1
109,047 - -1.3
109,047 - -0.9
109,065 - -1.8
109,065 - +0.5
109,071 - -1.7
109,071 - -3.7
109,075 + -0.4
109,075 + -0.1
109,083 - -2.2
109,086 + -1.6
109,132 + -0.9
109,132 - -2.7
109,252 - -1.0
109,288 + -0.7
109,298 + -0.1
109,305 - -1.2
109,305 - -0.5
109,305 - +0.5
109,305 - +0.4
109,305 - -0.8
109,306 - -0.8
109,358 + -0.0
109,404 + -0.2
109,413 + +0.5
109,413 + +0.6
109,413 + -1.2
109,413 + +0.1
109,413 + -0.3
109,413 + +0.8
109,413 + -1.0
109,413 + +0.2
109,413 + +0.4
109,413 + -0.0
109,413 + +0.5
109,413 + +0.3
109,413 + +0.3
109,421 - -0.4
109,421 - -0.8
109,421 - -1.5
109,421 - +0.2
109,421 - -0.4
109,421 - -0.2
109,421 - -1.4
109,421 - -2.0
109,421 - -0.9
109,442 - -0.6
109,496 + -0.2
109,533 + -0.4
109,541 - -0.3
109,581 + -1.0
109,690 - Shewana3_0098 0.19 -0.1
109,711 + Shewana3_0098 0.20 -0.6

Or see this region's nucleotide sequence