Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0068 and Shewana3_0069 are separated by 92 nucleotides Shewana3_0069 and mogA are separated by 205 nucleotides mogA and Shewana3_0071 are separated by 33 nucleotides
Shewana3_0068: Shewana3_0068 - TonB-dependent receptor (RefSeq), at 80,143 to 82,539
_0068
Shewana3_0069: Shewana3_0069 - Fructokinase (EC 2.7.1.4) (from data) , at 82,632 to 83,591
_0069
Shewana3_0070: mogA - molybdenum cofactor biosynthesis protein (RefSeq), at 83,797 to 84,330
mogA
Shewana3_0071: Shewana3_0071 - hypothetical protein (RefSeq), at 84,364 to 84,582
_0071
Position (kb)
82
83
84 Strain fitness (log2 ratio)
-2
-1
0
1 at 81.720 kb on - strand, within Shewana3_0068 at 81.801 kb on + strand, within Shewana3_0068 at 82.092 kb on + strand, within Shewana3_0068 at 82.093 kb on + strand, within Shewana3_0068 at 82.163 kb on - strand, within Shewana3_0068 at 82.291 kb on - strand, within Shewana3_0068 at 82.310 kb on + strand at 82.318 kb on - strand at 82.318 kb on - strand at 82.328 kb on - strand at 82.346 kb on + strand at 82.354 kb on - strand at 82.357 kb on + strand at 82.364 kb on - strand at 82.430 kb on - strand at 82.447 kb on + strand at 82.638 kb on + strand at 83.234 kb on + strand, within Shewana3_0069 at 83.278 kb on + strand, within Shewana3_0069 at 83.311 kb on + strand, within Shewana3_0069 at 83.314 kb on - strand, within Shewana3_0069 at 83.321 kb on + strand, within Shewana3_0069 at 83.371 kb on - strand, within Shewana3_0069 at 83.428 kb on + strand, within Shewana3_0069 at 83.485 kb on + strand, within Shewana3_0069 at 83.490 kb on + strand, within Shewana3_0069 at 83.527 kb on - strand at 83.529 kb on + strand at 83.572 kb on + strand at 83.586 kb on + strand at 83.707 kb on + strand at 83.775 kb on - strand at 83.807 kb on - strand at 83.984 kb on - strand, within mogA at 84.034 kb on - strand, within mogA at 84.055 kb on - strand, within mogA at 84.082 kb on + strand, within mogA at 84.254 kb on + strand, within mogA at 84.268 kb on - strand, within mogA at 84.272 kb on - strand, within mogA at 84.460 kb on - strand, within Shewana3_0071 at 84.505 kb on + strand, within Shewana3_0071 at 84.505 kb on + strand, within Shewana3_0071 at 84.513 kb on - strand, within Shewana3_0071 at 84.541 kb on + strand, within Shewana3_0071 at 84.542 kb on - strand, within Shewana3_0071 at 84.566 kb on + strand at 84.569 kb on - strand at 84.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 81,720 - Shewana3_0068 0.66 -0.3 81,801 + Shewana3_0068 0.69 +0.3 82,092 + Shewana3_0068 0.81 +0.3 82,093 + Shewana3_0068 0.81 +0.4 82,163 - Shewana3_0068 0.84 +0.4 82,291 - Shewana3_0068 0.90 -0.8 82,310 + -0.2 82,318 - -1.0 82,318 - -1.5 82,328 - -0.7 82,346 + +0.2 82,354 - -1.1 82,357 + +0.4 82,364 - -1.8 82,430 - -1.0 82,447 + +0.5 82,638 + +0.5 83,234 + Shewana3_0069 0.63 +0.4 83,278 + Shewana3_0069 0.67 +0.2 83,311 + Shewana3_0069 0.71 -0.3 83,314 - Shewana3_0069 0.71 -0.2 83,321 + Shewana3_0069 0.72 +0.6 83,371 - Shewana3_0069 0.77 -1.9 83,428 + Shewana3_0069 0.83 +0.5 83,485 + Shewana3_0069 0.89 +0.7 83,490 + Shewana3_0069 0.89 +0.5 83,527 - -1.9 83,529 + +0.5 83,572 + +0.4 83,586 + +0.4 83,707 + +0.4 83,775 - +0.3 83,807 - -0.3 83,984 - mogA Shewana3_0070 0.35 +0.5 84,034 - mogA Shewana3_0070 0.44 -0.5 84,055 - mogA Shewana3_0070 0.48 -0.8 84,082 + mogA Shewana3_0070 0.53 +0.2 84,254 + mogA Shewana3_0070 0.86 +0.6 84,268 - mogA Shewana3_0070 0.88 -0.1 84,272 - mogA Shewana3_0070 0.89 +0.3 84,460 - Shewana3_0071 0.44 +0.5 84,505 + Shewana3_0071 0.64 -0.8 84,505 + Shewana3_0071 0.64 -1.1 84,513 - Shewana3_0071 0.68 +0.5 84,541 + Shewana3_0071 0.81 -0.3 84,542 - Shewana3_0071 0.81 +0.2 84,566 + -0.8 84,569 - -0.1 84,584 - +0.6
Or see this region's nucleotide sequence