Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0061 and Shewana3_0062 are separated by 134 nucleotides Shewana3_0062 and Shewana3_0063 are separated by 99 nucleotides Shewana3_0063 and Shewana3_0064 are separated by 24 nucleotides
Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821
_0061
Shewana3_0062: Shewana3_0062 - hypothetical protein (RefSeq), at 72,956 to 73,693
_0062
Shewana3_0063: Shewana3_0063 - NLP/P60 protein (RefSeq), at 73,793 to 74,272
_0063
Shewana3_0064: Shewana3_0064 - major facilitator transporter (RefSeq), at 74,297 to 75,745
_0064
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 72.209 kb on + strand, within Shewana3_0061 at 72.217 kb on - strand, within Shewana3_0061 at 72.276 kb on + strand, within Shewana3_0061 at 72.420 kb on - strand, within Shewana3_0061 at 72.426 kb on + strand, within Shewana3_0061 at 72.506 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.579 kb on - strand, within Shewana3_0061 at 72.632 kb on - strand, within Shewana3_0061 at 72.846 kb on - strand at 72.928 kb on - strand at 73.158 kb on + strand, within Shewana3_0062 at 73.159 kb on + strand, within Shewana3_0062 at 73.270 kb on - strand, within Shewana3_0062 at 73.312 kb on - strand, within Shewana3_0062 at 73.458 kb on - strand, within Shewana3_0062 at 73.573 kb on - strand, within Shewana3_0062 at 73.693 kb on + strand at 73.797 kb on + strand at 73.843 kb on - strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.899 kb on - strand, within Shewana3_0063 at 74.035 kb on + strand, within Shewana3_0063 at 74.112 kb on - strand, within Shewana3_0063 at 74.285 kb on + strand at 74.293 kb on - strand at 74.301 kb on - strand at 74.330 kb on + strand at 74.481 kb on + strand, within Shewana3_0064 at 74.573 kb on - strand, within Shewana3_0064
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 72,209 + Shewana3_0061 0.34 +0.0 72,217 - Shewana3_0061 0.35 -0.6 72,276 + Shewana3_0061 0.41 -0.0 72,420 - Shewana3_0061 0.57 -0.2 72,426 + Shewana3_0061 0.57 -0.1 72,506 - Shewana3_0061 0.66 -1.4 72,551 - Shewana3_0061 0.71 -0.1 72,551 - Shewana3_0061 0.71 -1.1 72,579 - Shewana3_0061 0.74 -1.0 72,632 - Shewana3_0061 0.80 +0.1 72,846 - -0.1 72,928 - +0.6 73,158 + Shewana3_0062 0.27 -0.0 73,159 + Shewana3_0062 0.28 +0.0 73,270 - Shewana3_0062 0.43 -0.8 73,312 - Shewana3_0062 0.48 -0.7 73,458 - Shewana3_0062 0.68 -1.2 73,573 - Shewana3_0062 0.84 -0.9 73,693 + +0.2 73,797 + -0.1 73,843 - Shewana3_0063 0.10 +0.6 73,870 + Shewana3_0063 0.16 -0.2 73,870 + Shewana3_0063 0.16 -0.4 73,899 - Shewana3_0063 0.22 +0.5 74,035 + Shewana3_0063 0.50 +0.6 74,112 - Shewana3_0063 0.66 +0.1 74,285 + +0.1 74,293 - +0.1 74,301 - -0.5 74,330 + -1.3 74,481 + Shewana3_0064 0.13 -0.2 74,573 - Shewana3_0064 0.19 +0.2
Or see this region's nucleotide sequence