Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0060 and Shewana3_0061 are separated by 228 nucleotides Shewana3_0061 and Shewana3_0062 are separated by 134 nucleotides Shewana3_0062 and Shewana3_0063 are separated by 99 nucleotides
Shewana3_0060: Shewana3_0060 - ATPase domain-containing protein (RefSeq), at 70,620 to 71,666
_0060
Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821
_0061
Shewana3_0062: Shewana3_0062 - hypothetical protein (RefSeq), at 72,956 to 73,693
_0062
Shewana3_0063: Shewana3_0063 - NLP/P60 protein (RefSeq), at 73,793 to 74,272
_0063
Position (kb) 71
72
73 Strain fitness (log2 ratio) -1
0
1 at 70.907 kb on + strand, within Shewana3_0060 at 70.915 kb on - strand, within Shewana3_0060 at 71.019 kb on - strand, within Shewana3_0060 at 71.034 kb on + strand, within Shewana3_0060 at 71.185 kb on - strand, within Shewana3_0060 at 71.495 kb on - strand, within Shewana3_0060 at 71.549 kb on - strand, within Shewana3_0060 at 71.571 kb on + strand at 71.708 kb on + strand at 71.710 kb on - strand at 71.937 kb on + strand at 71.937 kb on + strand at 72.209 kb on + strand, within Shewana3_0061 at 72.217 kb on - strand, within Shewana3_0061 at 72.276 kb on + strand, within Shewana3_0061 at 72.420 kb on - strand, within Shewana3_0061 at 72.426 kb on + strand, within Shewana3_0061 at 72.506 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.579 kb on - strand, within Shewana3_0061 at 72.632 kb on - strand, within Shewana3_0061 at 72.846 kb on - strand at 72.928 kb on - strand at 73.158 kb on + strand, within Shewana3_0062 at 73.159 kb on + strand, within Shewana3_0062 at 73.270 kb on - strand, within Shewana3_0062 at 73.312 kb on - strand, within Shewana3_0062 at 73.458 kb on - strand, within Shewana3_0062 at 73.573 kb on - strand, within Shewana3_0062 at 73.693 kb on + strand at 73.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 70,907 + Shewana3_0060 0.27 +0.4 70,915 - Shewana3_0060 0.28 -0.1 71,019 - Shewana3_0060 0.38 -0.4 71,034 + Shewana3_0060 0.40 +0.5 71,185 - Shewana3_0060 0.54 -0.5 71,495 - Shewana3_0060 0.84 -0.4 71,549 - Shewana3_0060 0.89 -0.2 71,571 + -0.2 71,708 + +0.5 71,710 - -0.9 71,937 + -1.2 71,937 + +0.1 72,209 + Shewana3_0061 0.34 +0.0 72,217 - Shewana3_0061 0.35 -0.6 72,276 + Shewana3_0061 0.41 -0.0 72,420 - Shewana3_0061 0.57 -0.2 72,426 + Shewana3_0061 0.57 -0.1 72,506 - Shewana3_0061 0.66 -1.4 72,551 - Shewana3_0061 0.71 -0.1 72,551 - Shewana3_0061 0.71 -1.1 72,579 - Shewana3_0061 0.74 -1.0 72,632 - Shewana3_0061 0.80 +0.1 72,846 - -0.1 72,928 - +0.6 73,158 + Shewana3_0062 0.27 -0.0 73,159 + Shewana3_0062 0.28 +0.0 73,270 - Shewana3_0062 0.43 -0.8 73,312 - Shewana3_0062 0.48 -0.7 73,458 - Shewana3_0062 0.68 -1.2 73,573 - Shewana3_0062 0.84 -0.9 73,693 + +0.2 73,797 + -0.1
Or see this region's nucleotide sequence