Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpsA and Shewana3_0055 are separated by 238 nucleotides Shewana3_0055 and Shewana3_0056 are separated by 722 nucleotides
Shewana3_0054: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 63,221 to 64,237
gpsA
Shewana3_0055: Shewana3_0055 - hypothetical protein (RefSeq), at 64,476 to 65,660
_0055
Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246
_0056
Position (kb)
64
65
66 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 64.344 kb on - strand at 64.397 kb on + strand at 64.404 kb on - strand at 64.474 kb on - strand at 64.518 kb on + strand at 64.744 kb on + strand, within Shewana3_0055 at 64.765 kb on + strand, within Shewana3_0055 at 64.767 kb on - strand, within Shewana3_0055 at 64.846 kb on + strand, within Shewana3_0055 at 64.925 kb on + strand, within Shewana3_0055 at 64.988 kb on + strand, within Shewana3_0055 at 64.989 kb on + strand, within Shewana3_0055 at 64.989 kb on + strand, within Shewana3_0055 at 65.178 kb on + strand, within Shewana3_0055 at 65.186 kb on - strand, within Shewana3_0055 at 65.315 kb on + strand, within Shewana3_0055 at 65.323 kb on - strand, within Shewana3_0055 at 65.331 kb on - strand, within Shewana3_0055 at 65.333 kb on + strand, within Shewana3_0055 at 65.358 kb on + strand, within Shewana3_0055 at 65.373 kb on + strand, within Shewana3_0055 at 65.388 kb on + strand, within Shewana3_0055 at 65.459 kb on - strand, within Shewana3_0055 at 65.495 kb on + strand, within Shewana3_0055 at 65.512 kb on + strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.559 kb on - strand at 65.585 kb on - strand at 65.621 kb on + strand at 65.764 kb on - strand at 65.820 kb on + strand at 65.835 kb on - strand at 66.054 kb on - strand at 66.071 kb on - strand at 66.109 kb on - strand at 66.138 kb on - strand at 66.212 kb on + strand at 66.393 kb on - strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 64,344 - +0.0 64,397 + -0.8 64,404 - -0.6 64,474 - -1.3 64,518 + -0.3 64,744 + Shewana3_0055 0.23 +0.1 64,765 + Shewana3_0055 0.24 +0.0 64,767 - Shewana3_0055 0.25 -0.2 64,846 + Shewana3_0055 0.31 +0.2 64,925 + Shewana3_0055 0.38 +0.2 64,988 + Shewana3_0055 0.43 -0.4 64,989 + Shewana3_0055 0.43 +0.1 64,989 + Shewana3_0055 0.43 -0.4 65,178 + Shewana3_0055 0.59 +0.3 65,186 - Shewana3_0055 0.60 +0.1 65,315 + Shewana3_0055 0.71 +0.2 65,323 - Shewana3_0055 0.71 +0.2 65,331 - Shewana3_0055 0.72 -0.4 65,333 + Shewana3_0055 0.72 +0.1 65,358 + Shewana3_0055 0.74 +0.4 65,373 + Shewana3_0055 0.76 +0.2 65,388 + Shewana3_0055 0.77 +0.1 65,459 - Shewana3_0055 0.83 -0.9 65,495 + Shewana3_0055 0.86 +0.2 65,512 + Shewana3_0055 0.87 +0.6 65,520 - Shewana3_0055 0.88 +0.2 65,520 - Shewana3_0055 0.88 +0.1 65,520 - Shewana3_0055 0.88 +0.7 65,559 - +0.2 65,585 - +0.4 65,621 + -0.1 65,764 - -2.3 65,820 + -1.3 65,835 - -2.3 66,054 - -1.9 66,071 - -0.6 66,109 - +0.6 66,138 - -1.0 66,212 + -1.3 66,393 - -1.0 66,412 + -1.0 66,412 + -0.5 66,412 + -4.5 66,412 + +0.0 66,412 + -2.3 66,420 - -1.2 66,420 - -1.4 66,420 - -0.5 66,420 - -1.5
Or see this region's nucleotide sequence