Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4390 and Shewana3_4391 are separated by 128 nucleotides
Shewana3_4390: Shewana3_4390 - LysR family transcriptional regulator (RefSeq), at 276,877 to 277,758
_4390
Shewana3_4391: Shewana3_4391 - transmembrane pair domain-containing protein (RefSeq), at 277,887 to 278,324
_4391
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 277.103 kb on - strand, within Shewana3_4390 at 277.109 kb on + strand, within Shewana3_4390 at 277.272 kb on + strand, within Shewana3_4390 at 277.703 kb on - strand at 277.769 kb on + strand at 277.820 kb on - strand at 277.925 kb on - strand at 277.943 kb on + strand, within Shewana3_4391 at 277.951 kb on - strand, within Shewana3_4391 at 277.978 kb on + strand, within Shewana3_4391 at 277.991 kb on - strand, within Shewana3_4391 at 277.991 kb on - strand, within Shewana3_4391 at 278.024 kb on + strand, within Shewana3_4391 at 278.024 kb on + strand, within Shewana3_4391 at 278.032 kb on - strand, within Shewana3_4391 at 278.062 kb on - strand, within Shewana3_4391 at 278.116 kb on + strand, within Shewana3_4391 at 278.126 kb on - strand, within Shewana3_4391 at 278.129 kb on - strand, within Shewana3_4391 at 278.176 kb on - strand, within Shewana3_4391 at 278.199 kb on + strand, within Shewana3_4391 at 278.206 kb on + strand, within Shewana3_4391 at 278.214 kb on - strand, within Shewana3_4391 at 278.214 kb on - strand, within Shewana3_4391 at 278.217 kb on + strand, within Shewana3_4391 at 278.287 kb on - strand at 278.297 kb on + strand at 278.302 kb on + strand at 278.303 kb on - strand at 278.311 kb on - strand at 278.325 kb on + strand at 278.325 kb on + strand at 278.333 kb on - strand at 278.365 kb on + strand at 278.393 kb on + strand at 278.393 kb on + strand at 278.393 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on + strand at 278.396 kb on - strand at 278.398 kb on + strand at 278.398 kb on + strand at 278.398 kb on + strand at 278.401 kb on - strand at 278.401 kb on - strand at 278.401 kb on - strand at 278.401 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.404 kb on - strand at 278.406 kb on - strand at 278.406 kb on - strand at 278.406 kb on - strand at 278.412 kb on + strand at 278.419 kb on - strand at 278.430 kb on + strand at 278.430 kb on + strand at 278.438 kb on + strand at 278.438 kb on - strand at 278.438 kb on - strand at 278.439 kb on - strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.443 kb on + strand at 278.444 kb on + strand at 278.446 kb on - strand at 278.446 kb on - strand at 278.451 kb on - strand at 278.451 kb on - strand at 278.451 kb on - strand at 278.451 kb on - strand at 278.451 kb on - strand at 278.451 kb on - strand at 278.452 kb on - strand at 278.452 kb on - strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.453 kb on + strand at 278.456 kb on - strand at 278.461 kb on - strand at 278.461 kb on - strand at 278.466 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.467 kb on + strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.475 kb on - strand at 278.478 kb on + strand at 278.501 kb on + strand at 278.563 kb on + strand at 278.563 kb on + strand at 278.571 kb on - strand at 278.571 kb on - strand at 278.571 kb on - strand at 278.573 kb on + strand at 278.641 kb on + strand at 278.641 kb on + strand at 278.641 kb on + strand at 278.646 kb on - strand at 278.649 kb on - strand at 278.650 kb on + strand at 278.650 kb on - strand at 278.653 kb on + strand at 278.767 kb on + strand at 278.775 kb on - strand at 278.781 kb on + strand at 278.789 kb on - strand at 278.794 kb on + strand at 278.800 kb on + strand at 278.805 kb on + strand at 278.805 kb on + strand at 278.807 kb on + strand at 278.808 kb on - strand at 278.813 kb on - strand at 278.823 kb on + strand at 278.831 kb on - strand at 278.831 kb on - strand at 278.837 kb on + strand at 278.845 kb on - strand at 278.866 kb on - strand at 278.900 kb on + strand at 278.905 kb on + strand at 278.905 kb on + strand at 278.905 kb on + strand at 278.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 277,103 - Shewana3_4390 0.26 +0.3 277,109 + Shewana3_4390 0.26 -1.4 277,272 + Shewana3_4390 0.45 +0.1 277,703 - -1.4 277,769 + -1.0 277,820 - +0.0 277,925 - -0.3 277,943 + Shewana3_4391 0.13 +0.6 277,951 - Shewana3_4391 0.15 -0.9 277,978 + Shewana3_4391 0.21 +1.1 277,991 - Shewana3_4391 0.24 -0.9 277,991 - Shewana3_4391 0.24 +0.5 278,024 + Shewana3_4391 0.31 +0.7 278,024 + Shewana3_4391 0.31 +0.2 278,032 - Shewana3_4391 0.33 -0.4 278,062 - Shewana3_4391 0.40 +1.2 278,116 + Shewana3_4391 0.52 +0.1 278,126 - Shewana3_4391 0.55 +0.5 278,129 - Shewana3_4391 0.55 -0.7 278,176 - Shewana3_4391 0.66 -0.6 278,199 + Shewana3_4391 0.71 +0.4 278,206 + Shewana3_4391 0.73 +0.6 278,214 - Shewana3_4391 0.75 -0.6 278,214 - Shewana3_4391 0.75 -1.6 278,217 + Shewana3_4391 0.75 +0.1 278,287 - -1.4 278,297 + +0.8 278,302 + +0.6 278,303 - -0.0 278,311 - -1.2 278,325 + +0.5 278,325 + +0.9 278,333 - -0.3 278,365 + +0.8 278,393 + +0.6 278,393 + +0.6 278,393 + +0.7 278,396 + +0.8 278,396 + +1.0 278,396 + +0.5 278,396 + +1.0 278,396 + +0.3 278,396 + +1.0 278,396 + +0.4 278,396 + +1.3 278,396 - -1.7 278,398 + +0.9 278,398 + +0.7 278,398 + +0.1 278,401 - -1.9 278,401 - +0.4 278,401 - -1.4 278,401 - -0.4 278,404 - -3.4 278,404 - -0.3 278,404 - -0.8 278,404 - -2.4 278,404 - -0.7 278,404 - -1.6 278,404 - +0.6 278,406 - +0.5 278,406 - -1.0 278,406 - +0.2 278,412 + +0.1 278,419 - -0.1 278,430 + +0.6 278,430 + +0.3 278,438 + +0.4 278,438 - -2.3 278,438 - -0.1 278,439 - -0.0 278,443 + -0.5 278,443 + +0.6 278,443 + +0.6 278,443 + +0.9 278,443 + +1.7 278,443 + +0.5 278,443 + +0.9 278,443 + -0.4 278,443 + +0.5 278,443 + +1.1 278,443 + +0.5 278,444 + +0.6 278,446 - -0.5 278,446 - -2.1 278,451 - +0.4 278,451 - -1.4 278,451 - -2.4 278,451 - -0.7 278,451 - -0.1 278,451 - -1.4 278,452 - +1.1 278,452 - -2.3 278,453 + -2.5 278,453 + -1.4 278,453 + -0.1 278,453 + -0.1 278,453 + +0.4 278,453 + -1.9 278,453 + -2.3 278,453 + -0.9 278,456 - -0.0 278,461 - -0.5 278,461 - -0.8 278,466 + -1.3 278,467 + -0.6 278,467 + -2.4 278,467 + -0.0 278,467 + -2.7 278,467 + -0.8 278,467 + +0.2 278,467 + -2.8 278,467 + -0.0 278,467 + +0.6 278,467 + +0.4 278,467 + -0.1 278,467 + -0.2 278,475 - +0.3 278,475 - +0.2 278,475 - +0.8 278,475 - +0.2 278,475 - +1.0 278,475 - +0.5 278,475 - +0.3 278,475 - +0.4 278,475 - +0.2 278,475 - +0.6 278,475 - +0.3 278,475 - +0.3 278,475 - +1.3 278,475 - -0.2 278,475 - -1.3 278,475 - +0.5 278,475 - +0.1 278,475 - +0.3 278,475 - -0.8 278,478 + -3.7 278,501 + -1.5 278,563 + -1.0 278,563 + -0.4 278,571 - +0.1 278,571 - -0.1 278,571 - +0.0 278,573 + -1.0 278,641 + +0.4 278,641 + -1.6 278,641 + -0.8 278,646 - -2.6 278,649 - -0.7 278,650 + -2.0 278,650 - -0.5 278,653 + -3.2 278,767 + -0.8 278,775 - -0.8 278,781 + +1.0 278,789 - -1.8 278,794 + -0.5 278,800 + -0.8 278,805 + -1.7 278,805 + +0.0 278,807 + +0.4 278,808 - +0.3 278,813 - +1.0 278,823 + -1.2 278,831 - -0.8 278,831 - -1.0 278,837 + +0.4 278,845 - +0.4 278,866 - -2.6 278,900 + -0.4 278,905 + -0.4 278,905 + -0.0 278,905 + +2.0 278,932 - -0.6
Or see this region's nucleotide sequence