Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4363 and Shewana3_4364 are separated by 200 nucleotides Shewana3_4364 and Shewana3_4365 are separated by 191 nucleotides
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058
_4364
Shewana3_4365: Shewana3_4365 - chromate transporter (RefSeq), at 253,250 to 254,617
_4365
Position (kb) 252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.802 kb on - strand, within Shewana3_4363 at 252.015 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.480 kb on - strand at 252.545 kb on + strand, within Shewana3_4364 at 252.604 kb on - strand, within Shewana3_4364 at 252.704 kb on - strand, within Shewana3_4364 at 253.035 kb on - strand at 253.077 kb on - strand at 253.395 kb on - strand, within Shewana3_4365 at 253.733 kb on - strand, within Shewana3_4365 at 253.777 kb on - strand, within Shewana3_4365 at 253.887 kb on + strand, within Shewana3_4365 at 253.892 kb on + strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 254.045 kb on - strand, within Shewana3_4365
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 251,802 - Shewana3_4363 0.85 -0.6 252,015 - -0.3 252,022 - +0.2 252,022 - -0.8 252,022 - +0.7 252,480 - +0.2 252,545 + Shewana3_4364 0.16 +0.4 252,604 - Shewana3_4364 0.26 +0.7 252,704 - Shewana3_4364 0.42 +1.2 253,035 - -0.2 253,077 - +0.3 253,395 - Shewana3_4365 0.11 +0.7 253,733 - Shewana3_4365 0.35 -0.6 253,777 - Shewana3_4365 0.39 -0.0 253,887 + Shewana3_4365 0.47 -0.7 253,892 + Shewana3_4365 0.47 -1.1 253,895 - Shewana3_4365 0.47 +0.4 253,895 - Shewana3_4365 0.47 +0.0 254,045 - Shewana3_4365 0.58 +0.5
Or see this region's nucleotide sequence