Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4355 and Shewana3_4356 are separated by 200 nucleotides Shewana3_4356 and Shewana3_4357 are separated by 9 nucleotides Shewana3_4357 and Shewana3_4358 are separated by 857 nucleotides
Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708
_4355
Shewana3_4356: Shewana3_4356 - XRE family transcriptional regulator (RefSeq), at 241,909 to 242,253
_4356
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Shewana3_4358: Shewana3_4358 - phage integrase family protein (RefSeq), at 243,930 to 244,595
_4358
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 241.379 kb on - strand, within Shewana3_4355 at 241.485 kb on + strand, within Shewana3_4355 at 241.493 kb on - strand, within Shewana3_4355 at 241.494 kb on + strand, within Shewana3_4355 at 241.617 kb on - strand at 241.621 kb on - strand at 241.629 kb on - strand at 241.643 kb on + strand at 241.644 kb on + strand at 241.652 kb on - strand at 241.774 kb on + strand at 241.774 kb on + strand at 241.782 kb on - strand at 241.786 kb on + strand at 241.986 kb on + strand, within Shewana3_4356 at 241.986 kb on + strand, within Shewana3_4356 at 242.044 kb on + strand, within Shewana3_4356 at 242.107 kb on - strand, within Shewana3_4356 at 242.423 kb on - strand, within Shewana3_4357 at 242.509 kb on + strand, within Shewana3_4357 at 242.518 kb on + strand, within Shewana3_4357 at 242.617 kb on + strand, within Shewana3_4357 at 242.638 kb on - strand, within Shewana3_4357 at 242.658 kb on + strand, within Shewana3_4357 at 242.786 kb on - strand, within Shewana3_4357 at 242.945 kb on + strand, within Shewana3_4357 at 243.462 kb on - strand at 243.495 kb on + strand at 243.695 kb on + strand at 243.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 241,379 - Shewana3_4355 0.68 -0.2 241,485 + Shewana3_4355 0.78 -1.0 241,493 - Shewana3_4355 0.79 +0.3 241,494 + Shewana3_4355 0.79 -0.6 241,617 - +0.5 241,621 - -0.0 241,629 - +0.2 241,643 + -1.6 241,644 + +0.0 241,652 - +0.9 241,774 + -0.6 241,774 + +0.5 241,782 - +0.2 241,786 + +1.3 241,986 + Shewana3_4356 0.22 +1.3 241,986 + Shewana3_4356 0.22 +0.5 242,044 + Shewana3_4356 0.39 -0.2 242,107 - Shewana3_4356 0.57 -0.6 242,423 - Shewana3_4357 0.20 -0.8 242,509 + Shewana3_4357 0.30 +0.5 242,518 + Shewana3_4357 0.31 -1.9 242,617 + Shewana3_4357 0.44 -1.2 242,638 - Shewana3_4357 0.46 +1.0 242,658 + Shewana3_4357 0.49 -2.7 242,786 - Shewana3_4357 0.65 -0.5 242,945 + Shewana3_4357 0.84 +0.4 243,462 - -0.6 243,495 + -0.1 243,695 + -0.8 243,890 + -1.9
Or see this region's nucleotide sequence