Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4350 and Shewana3_4351 overlap by 4 nucleotides Shewana3_4351 and Shewana3_4352 are separated by 80 nucleotides
Shewana3_4350: Shewana3_4350 - hypothetical protein (RefSeq), at 234,373 to 235,905
_4350
Shewana3_4351: Shewana3_4351 - patatin (RefSeq), at 235,902 to 236,840
_4351
Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486
_4352
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 234.972 kb on + strand, within Shewana3_4350 at 234.973 kb on - strand, within Shewana3_4350 at 234.979 kb on - strand, within Shewana3_4350 at 234.980 kb on - strand, within Shewana3_4350 at 235.002 kb on + strand, within Shewana3_4350 at 235.069 kb on + strand, within Shewana3_4350 at 235.082 kb on + strand, within Shewana3_4350 at 235.083 kb on - strand, within Shewana3_4350 at 235.105 kb on + strand, within Shewana3_4350 at 235.209 kb on - strand, within Shewana3_4350 at 235.225 kb on - strand, within Shewana3_4350 at 235.243 kb on - strand, within Shewana3_4350 at 235.250 kb on + strand, within Shewana3_4350 at 235.258 kb on - strand, within Shewana3_4350 at 235.341 kb on + strand, within Shewana3_4350 at 235.489 kb on + strand, within Shewana3_4350 at 235.489 kb on - strand, within Shewana3_4350 at 235.497 kb on - strand, within Shewana3_4350 at 235.499 kb on - strand, within Shewana3_4350 at 235.501 kb on + strand, within Shewana3_4350 at 235.514 kb on + strand, within Shewana3_4350 at 235.536 kb on - strand, within Shewana3_4350 at 235.546 kb on - strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.631 kb on + strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.663 kb on + strand, within Shewana3_4350 at 235.663 kb on + strand, within Shewana3_4350 at 235.743 kb on + strand, within Shewana3_4350 at 235.743 kb on - strand, within Shewana3_4350 at 235.744 kb on + strand, within Shewana3_4350 at 235.752 kb on - strand at 235.752 kb on - strand at 235.752 kb on - strand at 236.133 kb on + strand, within Shewana3_4351 at 236.134 kb on + strand, within Shewana3_4351 at 236.161 kb on + strand, within Shewana3_4351 at 236.176 kb on - strand, within Shewana3_4351 at 236.176 kb on - strand, within Shewana3_4351 at 236.198 kb on - strand, within Shewana3_4351 at 236.268 kb on + strand, within Shewana3_4351 at 236.382 kb on - strand, within Shewana3_4351 at 236.469 kb on + strand, within Shewana3_4351 at 236.495 kb on + strand, within Shewana3_4351 at 236.554 kb on + strand, within Shewana3_4351 at 236.788 kb on + strand at 236.788 kb on + strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.797 kb on - strand at 236.978 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 237.035 kb on + strand at 237.188 kb on - strand, within Shewana3_4352 at 237.221 kb on + strand, within Shewana3_4352 at 237.229 kb on - strand, within Shewana3_4352 at 237.258 kb on - strand, within Shewana3_4352 at 237.424 kb on + strand at 237.432 kb on - strand, within Shewana3_4352 at 237.770 kb on + strand, within Shewana3_4352 at 237.775 kb on + strand, within Shewana3_4352
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 234,972 + Shewana3_4350 0.39 -0.1 234,973 - Shewana3_4350 0.39 -0.4 234,979 - Shewana3_4350 0.40 -0.4 234,980 - Shewana3_4350 0.40 -0.6 235,002 + Shewana3_4350 0.41 +0.2 235,069 + Shewana3_4350 0.45 -1.3 235,082 + Shewana3_4350 0.46 -2.8 235,083 - Shewana3_4350 0.46 -0.8 235,105 + Shewana3_4350 0.48 -0.0 235,209 - Shewana3_4350 0.55 -0.4 235,225 - Shewana3_4350 0.56 -0.7 235,243 - Shewana3_4350 0.57 -2.2 235,250 + Shewana3_4350 0.57 -1.5 235,258 - Shewana3_4350 0.58 -0.4 235,341 + Shewana3_4350 0.63 +1.0 235,489 + Shewana3_4350 0.73 +0.2 235,489 - Shewana3_4350 0.73 -0.8 235,497 - Shewana3_4350 0.73 -0.3 235,499 - Shewana3_4350 0.73 -1.0 235,501 + Shewana3_4350 0.74 -2.3 235,514 + Shewana3_4350 0.74 -2.5 235,536 - Shewana3_4350 0.76 -0.2 235,546 - Shewana3_4350 0.77 -0.7 235,627 + Shewana3_4350 0.82 -0.8 235,627 + Shewana3_4350 0.82 +1.0 235,627 + Shewana3_4350 0.82 +0.4 235,631 + Shewana3_4350 0.82 -0.3 235,635 - Shewana3_4350 0.82 -0.2 235,635 - Shewana3_4350 0.82 +0.4 235,635 - Shewana3_4350 0.82 -1.3 235,635 - Shewana3_4350 0.82 +0.1 235,663 + Shewana3_4350 0.84 +0.2 235,663 + Shewana3_4350 0.84 -1.3 235,743 + Shewana3_4350 0.89 -0.6 235,743 - Shewana3_4350 0.89 -1.0 235,744 + Shewana3_4350 0.89 +2.0 235,752 - -0.5 235,752 - +0.9 235,752 - -2.0 236,133 + Shewana3_4351 0.25 -2.4 236,134 + Shewana3_4351 0.25 -1.5 236,161 + Shewana3_4351 0.28 -0.6 236,176 - Shewana3_4351 0.29 -0.7 236,176 - Shewana3_4351 0.29 -0.3 236,198 - Shewana3_4351 0.32 -0.7 236,268 + Shewana3_4351 0.39 -2.2 236,382 - Shewana3_4351 0.51 +0.1 236,469 + Shewana3_4351 0.60 -0.8 236,495 + Shewana3_4351 0.63 -0.0 236,554 + Shewana3_4351 0.69 -0.6 236,788 + +1.0 236,788 + -0.4 236,796 - -0.6 236,796 - +0.5 236,796 - -0.6 236,796 - -0.1 236,796 - -0.6 236,797 - -0.1 236,978 - -0.1 236,979 - +1.0 236,979 - +0.9 236,979 - -0.0 237,035 + -0.4 237,188 - Shewana3_4352 0.17 +0.6 237,221 + Shewana3_4352 0.19 -1.4 237,229 - Shewana3_4352 0.20 +1.0 237,258 - Shewana3_4352 0.22 +0.8 237,424 + +0.4 237,432 - Shewana3_4352 0.33 -0.5 237,770 + Shewana3_4352 0.54 -1.0 237,775 + Shewana3_4352 0.55 -0.6
Or see this region's nucleotide sequence