Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4345 and Shewana3_4346 are separated by 17 nucleotides Shewana3_4346 and Shewana3_4347 overlap by 4 nucleotides Shewana3_4347 and Shewana3_4348 are separated by 65 nucleotides Shewana3_4348 and Shewana3_4349 are separated by 178 nucleotides
Shewana3_4345: Shewana3_4345 - putative mercuric reductase (RefSeq), at 230,394 to 232,079
_4345
Shewana3_4346: Shewana3_4346 - transcriptional regulator MerD (RefSeq), at 232,097 to 232,462
_4346
Shewana3_4347: Shewana3_4347 - putative mercury resistance protein (RefSeq), at 232,459 to 232,695
_4347
Shewana3_4348: Shewana3_4348 - hypothetical protein (RefSeq), at 232,761 to 232,973
_4348
Shewana3_4349: Shewana3_4349 - umuC protein (RefSeq), at 233,152 to 233,817
_4349
Position (kb) 232
233 Strain fitness (log2 ratio) -1
0
1 at 231.602 kb on - strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.751 kb on - strand, within Shewana3_4345 at 231.754 kb on - strand, within Shewana3_4345 at 232.104 kb on + strand at 232.439 kb on - strand at 232.464 kb on - strand at 232.616 kb on - strand, within Shewana3_4347 at 232.651 kb on - strand, within Shewana3_4347 at 232.732 kb on - strand at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.987 kb on - strand at 233.069 kb on - strand at 233.084 kb on - strand at 233.194 kb on + strand at 233.391 kb on + strand, within Shewana3_4349 at 233.563 kb on + strand, within Shewana3_4349 at 233.571 kb on - strand, within Shewana3_4349 at 233.571 kb on - strand, within Shewana3_4349
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 231,602 - Shewana3_4345 0.72 +0.7 231,602 - Shewana3_4345 0.72 +0.4 231,751 - Shewana3_4345 0.80 +0.2 231,754 - Shewana3_4345 0.81 -0.0 232,104 + +0.3 232,439 - +0.1 232,464 - -0.7 232,616 - Shewana3_4347 0.66 +0.8 232,651 - Shewana3_4347 0.81 +0.5 232,732 - -0.4 232,910 + Shewana3_4348 0.70 -0.9 232,910 + Shewana3_4348 0.70 -0.6 232,910 + Shewana3_4348 0.70 -0.2 232,987 - +0.1 233,069 - +0.3 233,084 - +0.5 233,194 + -0.4 233,391 + Shewana3_4349 0.36 -0.1 233,563 + Shewana3_4349 0.62 +0.1 233,571 - Shewana3_4349 0.63 -0.6 233,571 - Shewana3_4349 0.63 -0.2
Or see this region's nucleotide sequence