Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4342 and Shewana3_4343 are separated by 15 nucleotides Shewana3_4343 and Shewana3_4344 are separated by 27 nucleotides Shewana3_4344 and Shewana3_4345 are separated by 38 nucleotides Shewana3_4345 and Shewana3_4346 are separated by 17 nucleotides Shewana3_4346 and Shewana3_4347 overlap by 4 nucleotides Shewana3_4347 and Shewana3_4348 are separated by 65 nucleotides
Shewana3_4342: Shewana3_4342 - putative mercuric transport protein (RefSeq), at 229,216 to 229,611
_4342
Shewana3_4343: Shewana3_4343 - mercuric transport protein periplasmic component (RefSeq), at 229,627 to 229,902
_4343
Shewana3_4344: Shewana3_4344 - putative mercury transport protein MerC (RefSeq), at 229,930 to 230,355
_4344
Shewana3_4345: Shewana3_4345 - putative mercuric reductase (RefSeq), at 230,394 to 232,079
_4345
Shewana3_4346: Shewana3_4346 - transcriptional regulator MerD (RefSeq), at 232,097 to 232,462
_4346
Shewana3_4347: Shewana3_4347 - putative mercury resistance protein (RefSeq), at 232,459 to 232,695
_4347
Shewana3_4348: Shewana3_4348 - hypothetical protein (RefSeq), at 232,761 to 232,973
_4348
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -1
0
1 at 229.427 kb on + strand, within Shewana3_4342 at 229.432 kb on + strand, within Shewana3_4342 at 229.446 kb on + strand, within Shewana3_4342 at 229.674 kb on + strand, within Shewana3_4343 at 229.735 kb on - strand, within Shewana3_4343 at 229.784 kb on - strand, within Shewana3_4343 at 229.992 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.245 kb on - strand, within Shewana3_4344 at 230.252 kb on - strand, within Shewana3_4344 at 230.297 kb on + strand, within Shewana3_4344 at 230.307 kb on + strand, within Shewana3_4344 at 230.430 kb on - strand at 230.492 kb on - strand at 230.519 kb on - strand at 230.552 kb on + strand at 230.669 kb on - strand, within Shewana3_4345 at 230.812 kb on + strand, within Shewana3_4345 at 230.968 kb on - strand, within Shewana3_4345 at 231.014 kb on + strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.751 kb on - strand, within Shewana3_4345 at 231.754 kb on - strand, within Shewana3_4345 at 232.104 kb on + strand at 232.439 kb on - strand at 232.464 kb on - strand at 232.616 kb on - strand, within Shewana3_4347 at 232.651 kb on - strand, within Shewana3_4347 at 232.732 kb on - strand at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.987 kb on - strand at 233.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 229,427 + Shewana3_4342 0.53 +0.3 229,432 + Shewana3_4342 0.55 +0.2 229,446 + Shewana3_4342 0.58 +0.3 229,674 + Shewana3_4343 0.17 +0.5 229,735 - Shewana3_4343 0.39 +0.4 229,784 - Shewana3_4343 0.57 -0.4 229,992 + Shewana3_4344 0.15 +0.5 230,244 + Shewana3_4344 0.74 +0.3 230,244 + Shewana3_4344 0.74 +0.4 230,245 - Shewana3_4344 0.74 +0.7 230,252 - Shewana3_4344 0.76 -0.6 230,297 + Shewana3_4344 0.86 +0.3 230,307 + Shewana3_4344 0.88 +0.8 230,430 - +0.2 230,492 - +1.0 230,519 - -0.6 230,552 + +0.5 230,669 - Shewana3_4345 0.16 +0.4 230,812 + Shewana3_4345 0.25 -0.5 230,968 - Shewana3_4345 0.34 +0.4 231,014 + Shewana3_4345 0.37 +0.2 231,602 - Shewana3_4345 0.72 +0.7 231,602 - Shewana3_4345 0.72 +0.4 231,751 - Shewana3_4345 0.80 +0.2 231,754 - Shewana3_4345 0.81 -0.0 232,104 + +0.3 232,439 - +0.1 232,464 - -0.7 232,616 - Shewana3_4347 0.66 +0.8 232,651 - Shewana3_4347 0.81 +0.5 232,732 - -0.4 232,910 + Shewana3_4348 0.70 -0.9 232,910 + Shewana3_4348 0.70 -0.6 232,910 + Shewana3_4348 0.70 -0.2 232,987 - +0.1 233,069 - +0.3
Or see this region's nucleotide sequence