Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4336 and Shewana3_4337 are separated by 2 nucleotides Shewana3_4337 and Shewana3_4338 are separated by 186 nucleotides Shewana3_4338 and Shewana3_4339 are separated by 366 nucleotides
Shewana3_4336: Shewana3_4336 - AraC family transcriptional regulator (RefSeq), at 224,184 to 225,119
_4336
Shewana3_4337: Shewana3_4337 - hypothetical protein (RefSeq), at 225,122 to 225,862
_4337
Shewana3_4338: Shewana3_4338 - hypothetical protein (RefSeq), at 226,049 to 226,336
_4338
Shewana3_4339: Shewana3_4339 - integrase catalytic subunit (RefSeq), at 226,703 to 227,731
_4339
Position (kb) 226
227 Strain fitness (log2 ratio) -1
0
1
2 at 225.087 kb on - strand at 225.133 kb on + strand at 225.140 kb on + strand at 225.201 kb on - strand, within Shewana3_4337 at 225.300 kb on + strand, within Shewana3_4337 at 225.305 kb on + strand, within Shewana3_4337 at 225.402 kb on + strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.422 kb on + strand, within Shewana3_4337 at 225.592 kb on + strand, within Shewana3_4337 at 225.600 kb on - strand, within Shewana3_4337 at 225.699 kb on + strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.751 kb on - strand, within Shewana3_4337 at 225.856 kb on + strand at 225.997 kb on + strand at 226.004 kb on - strand at 226.116 kb on + strand, within Shewana3_4338 at 226.159 kb on - strand, within Shewana3_4338 at 226.437 kb on + strand at 226.680 kb on - strand at 226.818 kb on + strand, within Shewana3_4339 at 226.956 kb on + strand, within Shewana3_4339 at 226.956 kb on + strand, within Shewana3_4339 at 227.033 kb on - strand, within Shewana3_4339 at 227.093 kb on - strand, within Shewana3_4339 at 227.201 kb on - strand, within Shewana3_4339
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 225,087 - +2.0 225,133 + -0.0 225,140 + +0.5 225,201 - Shewana3_4337 0.11 -1.3 225,300 + Shewana3_4337 0.24 -0.2 225,305 + Shewana3_4337 0.25 +0.7 225,402 + Shewana3_4337 0.38 -1.1 225,410 - Shewana3_4337 0.39 -0.6 225,410 - Shewana3_4337 0.39 -0.4 225,422 + Shewana3_4337 0.40 +0.0 225,592 + Shewana3_4337 0.63 -1.2 225,600 - Shewana3_4337 0.65 -0.8 225,699 + Shewana3_4337 0.78 -0.6 225,724 - Shewana3_4337 0.81 -1.0 225,724 - Shewana3_4337 0.81 -1.4 225,751 - Shewana3_4337 0.85 -0.8 225,856 + +0.0 225,997 + +0.3 226,004 - -0.0 226,116 + Shewana3_4338 0.23 +1.2 226,159 - Shewana3_4338 0.38 +1.0 226,437 + -1.5 226,680 - -0.3 226,818 + Shewana3_4339 0.11 -0.1 226,956 + Shewana3_4339 0.25 +1.0 226,956 + Shewana3_4339 0.25 -1.6 227,033 - Shewana3_4339 0.32 +0.1 227,093 - Shewana3_4339 0.38 +0.8 227,201 - Shewana3_4339 0.48 +0.6
Or see this region's nucleotide sequence