Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4323 and Shewana3_4324 are separated by 590 nucleotides Shewana3_4324 and Shewana3_4325 overlap by 4 nucleotides Shewana3_4325 and Shewana3_4326 are separated by 2 nucleotides
Shewana3_4323: Shewana3_4323 - MerR family transcriptional regulator (RefSeq), at 213,486 to 213,926
_4323
Shewana3_4324: Shewana3_4324 - methionine sulfoxide reductase A (RefSeq), at 214,517 to 215,089
_4324
Shewana3_4325: Shewana3_4325 - methionine sulfoxide reductase A (RefSeq), at 215,086 to 215,586
_4325
Shewana3_4326: Shewana3_4326 - methionine sulfoxide reductase B (RefSeq), at 215,589 to 216,035
_4326
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.531 kb on + strand, within Shewana3_4323 at 213.569 kb on + strand, within Shewana3_4323 at 213.706 kb on + strand, within Shewana3_4323 at 213.714 kb on - strand, within Shewana3_4323 at 213.716 kb on + strand, within Shewana3_4323 at 213.728 kb on + strand, within Shewana3_4323 at 213.736 kb on - strand, within Shewana3_4323 at 213.793 kb on - strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.849 kb on - strand, within Shewana3_4323 at 214.076 kb on - strand at 214.177 kb on + strand at 214.222 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.229 kb on + strand at 214.288 kb on - strand at 214.515 kb on + strand at 214.539 kb on - strand at 214.569 kb on - strand at 214.569 kb on - strand at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.769 kb on - strand, within Shewana3_4324 at 214.787 kb on + strand, within Shewana3_4324 at 214.830 kb on - strand, within Shewana3_4324 at 214.840 kb on - strand, within Shewana3_4324 at 214.916 kb on + strand, within Shewana3_4324 at 215.096 kb on - strand at 215.174 kb on - strand, within Shewana3_4325 at 215.318 kb on + strand, within Shewana3_4325 at 215.473 kb on - strand, within Shewana3_4325 at 215.568 kb on - strand at 215.603 kb on - strand at 215.620 kb on + strand at 215.680 kb on - strand, within Shewana3_4326 at 215.702 kb on + strand, within Shewana3_4326 at 215.814 kb on + strand, within Shewana3_4326 at 215.859 kb on - strand, within Shewana3_4326 at 215.880 kb on + strand, within Shewana3_4326 at 215.964 kb on - strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.994 kb on - strand at 216.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 213,531 + Shewana3_4323 0.10 +0.0 213,569 + Shewana3_4323 0.19 -1.1 213,706 + Shewana3_4323 0.50 -1.0 213,714 - Shewana3_4323 0.52 +0.7 213,716 + Shewana3_4323 0.52 -0.4 213,728 + Shewana3_4323 0.55 +0.4 213,736 - Shewana3_4323 0.57 -0.2 213,793 - Shewana3_4323 0.70 -0.7 213,841 + Shewana3_4323 0.80 -0.2 213,841 + Shewana3_4323 0.80 +0.1 213,849 - Shewana3_4323 0.82 -0.8 214,076 - -0.7 214,177 + -1.4 214,222 + -1.7 214,224 + -1.7 214,224 + -0.4 214,224 + +0.9 214,229 + -0.7 214,288 - -0.4 214,515 + -0.3 214,539 - -0.7 214,569 - -1.9 214,569 - -0.8 214,644 + Shewana3_4324 0.22 -0.0 214,644 + Shewana3_4324 0.22 -1.7 214,644 + Shewana3_4324 0.22 -0.8 214,652 - Shewana3_4324 0.24 -1.9 214,652 - Shewana3_4324 0.24 -0.1 214,652 - Shewana3_4324 0.24 -0.3 214,769 - Shewana3_4324 0.44 -0.4 214,787 + Shewana3_4324 0.47 +0.1 214,830 - Shewana3_4324 0.55 -1.9 214,840 - Shewana3_4324 0.56 -0.6 214,916 + Shewana3_4324 0.70 -1.6 215,096 - +0.6 215,174 - Shewana3_4325 0.18 +0.7 215,318 + Shewana3_4325 0.46 -0.8 215,473 - Shewana3_4325 0.77 +0.3 215,568 - +0.3 215,603 - +0.5 215,620 + -2.8 215,680 - Shewana3_4326 0.20 -0.4 215,702 + Shewana3_4326 0.25 -1.1 215,814 + Shewana3_4326 0.50 -1.8 215,859 - Shewana3_4326 0.60 +0.2 215,880 + Shewana3_4326 0.65 -0.0 215,964 - Shewana3_4326 0.84 +0.5 215,974 + Shewana3_4326 0.86 -1.6 215,974 + Shewana3_4326 0.86 -0.7 215,994 - -0.5 216,058 + -1.8
Or see this region's nucleotide sequence