Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4313 and Shewana3_4314 are separated by 55 nucleotides Shewana3_4314 and Shewana3_4315 are separated by 93 nucleotides Shewana3_4315 and Shewana3_4316 overlap by 4 nucleotides Shewana3_4316 and Shewana3_4317 are separated by 204 nucleotides
Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060
_4313
Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463
_4314
Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949
_4315
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222
_4317
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1 at 202.973 kb on - strand, within Shewana3_4313 at 203.242 kb on + strand, within Shewana3_4314 at 203.250 kb on - strand, within Shewana3_4314 at 203.390 kb on + strand, within Shewana3_4314 at 203.395 kb on + strand, within Shewana3_4314 at 203.398 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.944 kb on + strand at 203.962 kb on - strand at 204.144 kb on + strand, within Shewana3_4316 at 204.252 kb on - strand, within Shewana3_4316 at 204.257 kb on + strand, within Shewana3_4316 at 204.328 kb on + strand, within Shewana3_4316 at 204.440 kb on - strand, within Shewana3_4316 at 204.672 kb on - strand, within Shewana3_4316 at 204.677 kb on - strand, within Shewana3_4316 at 204.711 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.724 kb on + strand, within Shewana3_4316 at 204.842 kb on - strand, within Shewana3_4316 at 205.237 kb on + strand at 205.269 kb on + strand at 205.277 kb on - strand at 205.379 kb on + strand, within Shewana3_4317 at 205.521 kb on + strand, within Shewana3_4317 at 205.521 kb on - strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.709 kb on + strand, within Shewana3_4317 at 205.828 kb on - strand, within Shewana3_4317 at 205.831 kb on + strand, within Shewana3_4317 at 205.848 kb on - strand, within Shewana3_4317 at 205.906 kb on - strand, within Shewana3_4317 at 205.916 kb on - strand, within Shewana3_4317 at 205.952 kb on + strand, within Shewana3_4317
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 202,973 - Shewana3_4313 0.68 -0.6 203,242 + Shewana3_4314 0.36 -0.2 203,250 - Shewana3_4314 0.39 +0.8 203,390 + Shewana3_4314 0.79 -1.4 203,395 + Shewana3_4314 0.80 -1.3 203,398 - Shewana3_4314 0.81 +0.5 203,403 - Shewana3_4314 0.82 +0.4 203,403 - Shewana3_4314 0.82 +0.5 203,944 + -1.0 203,962 - +0.5 204,144 + Shewana3_4316 0.19 -0.1 204,252 - Shewana3_4316 0.30 -0.1 204,257 + Shewana3_4316 0.30 +0.1 204,328 + Shewana3_4316 0.37 +0.3 204,440 - Shewana3_4316 0.48 +0.2 204,672 - Shewana3_4316 0.71 +0.8 204,677 - Shewana3_4316 0.71 +0.4 204,711 + Shewana3_4316 0.75 -0.3 204,716 + Shewana3_4316 0.75 +0.3 204,716 + Shewana3_4316 0.75 +0.0 204,724 + Shewana3_4316 0.76 -0.4 204,842 - Shewana3_4316 0.88 +0.2 205,237 + +0.8 205,269 + +0.2 205,277 - -0.5 205,379 + Shewana3_4317 0.20 -0.2 205,521 + Shewana3_4317 0.33 +0.2 205,521 - Shewana3_4317 0.33 -0.5 205,569 + Shewana3_4317 0.38 +0.4 205,569 + Shewana3_4317 0.38 +0.6 205,709 + Shewana3_4317 0.51 -1.5 205,828 - Shewana3_4317 0.62 +0.6 205,831 + Shewana3_4317 0.63 +0.8 205,848 - Shewana3_4317 0.64 -1.1 205,906 - Shewana3_4317 0.70 +0.7 205,916 - Shewana3_4317 0.71 -0.4 205,952 + Shewana3_4317 0.74 -1.0
Or see this region's nucleotide sequence