Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4290 and Shewana3_4291 are separated by 75 nucleotides Shewana3_4291 and Shewana3_4292 are separated by 188 nucleotides Shewana3_4292 and Shewana3_4293 are separated by 456 nucleotides
Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261
_4290
Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780
_4291
Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514
_4292
Shewana3_4293: Shewana3_4293 - outer membrane porin (RefSeq), at 175,971 to 177,167
_4293
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.976 kb on + strand, within Shewana3_4290 at 173.995 kb on + strand, within Shewana3_4290 at 174.022 kb on + strand, within Shewana3_4290 at 174.030 kb on - strand, within Shewana3_4290 at 174.064 kb on - strand, within Shewana3_4290 at 174.092 kb on + strand, within Shewana3_4290 at 174.141 kb on + strand, within Shewana3_4290 at 174.208 kb on - strand at 174.331 kb on + strand at 174.344 kb on - strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.354 kb on - strand at 174.429 kb on + strand, within Shewana3_4291 at 174.485 kb on - strand, within Shewana3_4291 at 174.540 kb on - strand, within Shewana3_4291 at 174.577 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.665 kb on + strand, within Shewana3_4291 at 174.681 kb on + strand, within Shewana3_4291 at 174.703 kb on - strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.727 kb on - strand, within Shewana3_4291 at 174.781 kb on - strand at 174.858 kb on + strand at 174.876 kb on - strand at 174.931 kb on + strand at 174.985 kb on - strand at 175.005 kb on - strand at 175.025 kb on - strand, within Shewana3_4292 at 175.025 kb on - strand, within Shewana3_4292 at 175.027 kb on + strand, within Shewana3_4292 at 175.115 kb on + strand, within Shewana3_4292 at 175.161 kb on - strand, within Shewana3_4292 at 175.168 kb on + strand at 175.212 kb on + strand, within Shewana3_4292 at 175.230 kb on - strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.260 kb on - strand, within Shewana3_4292 at 175.306 kb on + strand, within Shewana3_4292 at 175.388 kb on + strand, within Shewana3_4292 at 175.396 kb on - strand, within Shewana3_4292 at 175.411 kb on + strand, within Shewana3_4292 at 175.421 kb on - strand, within Shewana3_4292 at 175.466 kb on + strand at 175.515 kb on + strand at 175.523 kb on - strand at 175.528 kb on - strand at 175.608 kb on - strand at 175.637 kb on - strand at 175.683 kb on - strand at 175.685 kb on + strand at 175.691 kb on - strand at 175.697 kb on - strand at 175.710 kb on + strand at 175.718 kb on - strand at 175.993 kb on + strand at 176.001 kb on - strand at 176.003 kb on + strand at 176.011 kb on - strand at 176.036 kb on + strand at 176.059 kb on - strand at 176.072 kb on - strand at 176.177 kb on + strand, within Shewana3_4293 at 176.190 kb on + strand, within Shewana3_4293 at 176.196 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.197 kb on + strand, within Shewana3_4293 at 176.198 kb on - strand, within Shewana3_4293 at 176.228 kb on + strand, within Shewana3_4293 at 176.262 kb on - strand, within Shewana3_4293 at 176.267 kb on - strand, within Shewana3_4293 at 176.268 kb on - strand, within Shewana3_4293 at 176.309 kb on + strand, within Shewana3_4293
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 173,976 + Shewana3_4290 0.68 -0.2 173,995 + Shewana3_4290 0.70 +0.2 174,022 + Shewana3_4290 0.73 -1.7 174,030 - Shewana3_4290 0.74 +2.0 174,064 - Shewana3_4290 0.78 -1.2 174,092 + Shewana3_4290 0.81 -0.0 174,141 + Shewana3_4290 0.87 -0.9 174,208 - +2.0 174,331 + +0.5 174,344 - -0.0 174,346 + +0.4 174,346 + +0.2 174,346 + +0.5 174,354 - -0.8 174,429 + Shewana3_4291 0.21 +0.5 174,485 - Shewana3_4291 0.33 -1.6 174,540 - Shewana3_4291 0.46 -0.1 174,577 + Shewana3_4291 0.54 +0.6 174,595 + Shewana3_4291 0.58 +0.5 174,595 + Shewana3_4291 0.58 +0.3 174,603 - Shewana3_4291 0.60 +0.4 174,603 - Shewana3_4291 0.60 -0.4 174,665 + Shewana3_4291 0.74 +0.8 174,681 + Shewana3_4291 0.77 +0.3 174,703 - Shewana3_4291 0.82 -1.1 174,719 + Shewana3_4291 0.86 -0.5 174,719 + Shewana3_4291 0.86 +0.1 174,727 - Shewana3_4291 0.88 -2.0 174,781 - -0.4 174,858 + -0.6 174,876 - -0.4 174,931 + -0.4 174,985 - -0.7 175,005 - -0.3 175,025 - Shewana3_4292 0.10 +0.6 175,025 - Shewana3_4292 0.10 -0.0 175,027 + Shewana3_4292 0.11 +0.4 175,115 + Shewana3_4292 0.27 -0.8 175,161 - Shewana3_4292 0.35 -0.5 175,168 + +0.4 175,212 + Shewana3_4292 0.45 +0.4 175,230 - Shewana3_4292 0.48 -0.6 175,252 + Shewana3_4292 0.52 -1.2 175,252 + Shewana3_4292 0.52 -1.0 175,252 + Shewana3_4292 0.52 -0.4 175,252 + Shewana3_4292 0.52 -2.4 175,260 - Shewana3_4292 0.53 -1.2 175,306 + Shewana3_4292 0.62 +1.0 175,388 + Shewana3_4292 0.77 -0.4 175,396 - Shewana3_4292 0.78 -2.7 175,411 + Shewana3_4292 0.81 -0.8 175,421 - Shewana3_4292 0.83 +0.5 175,466 + -0.0 175,515 + -1.0 175,523 - -2.4 175,528 - -1.1 175,608 - +0.3 175,637 - +0.1 175,683 - +0.3 175,685 + -1.9 175,691 - -2.3 175,697 - -0.7 175,710 + -0.3 175,718 - -3.5 175,993 + +0.5 176,001 - +0.4 176,003 + -1.6 176,011 - -0.9 176,036 + +0.2 176,059 - +1.0 176,072 - -0.6 176,177 + Shewana3_4293 0.17 -1.5 176,190 + Shewana3_4293 0.18 -2.0 176,196 + Shewana3_4293 0.19 -1.8 176,197 + Shewana3_4293 0.19 +0.3 176,197 + Shewana3_4293 0.19 -1.5 176,197 + Shewana3_4293 0.19 -1.4 176,197 + Shewana3_4293 0.19 -1.8 176,197 + Shewana3_4293 0.19 -1.1 176,197 + Shewana3_4293 0.19 -1.0 176,198 - Shewana3_4293 0.19 +2.0 176,228 + Shewana3_4293 0.21 -0.2 176,262 - Shewana3_4293 0.24 -0.0 176,267 - Shewana3_4293 0.25 -2.6 176,268 - Shewana3_4293 0.25 -1.2 176,309 + Shewana3_4293 0.28 +0.4
Or see this region's nucleotide sequence