Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4280 and Shewana3_4281 are separated by 10 nucleotides Shewana3_4281 and Shewana3_4282 are separated by 60 nucleotides Shewana3_4282 and Shewana3_4283 are separated by 9 nucleotides
Shewana3_4280: Shewana3_4280 - putative periplasmic protein (RefSeq), at 161,679 to 164,060
_4280
Shewana3_4281: Shewana3_4281 - hypothetical protein (RefSeq), at 164,071 to 166,488
_4281
Shewana3_4282: Shewana3_4282 - IS4 family transposase (RefSeq), at 166,549 to 167,286
_4282
Shewana3_4283: Shewana3_4283 - transposase (RefSeq), at 167,296 to 167,466
_4283
Position (kb) 164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 163.152 kb on - strand, within Shewana3_4280 at 163.201 kb on - strand, within Shewana3_4280 at 163.304 kb on + strand, within Shewana3_4280 at 163.467 kb on + strand, within Shewana3_4280 at 163.532 kb on + strand, within Shewana3_4280 at 163.532 kb on + strand, within Shewana3_4280 at 163.540 kb on - strand, within Shewana3_4280 at 163.540 kb on - strand, within Shewana3_4280 at 163.556 kb on + strand, within Shewana3_4280 at 163.557 kb on + strand, within Shewana3_4280 at 163.565 kb on - strand, within Shewana3_4280 at 163.640 kb on + strand, within Shewana3_4280 at 163.662 kb on + strand, within Shewana3_4280 at 163.667 kb on + strand, within Shewana3_4280 at 163.825 kb on - strand at 163.825 kb on - strand at 163.825 kb on - strand at 163.897 kb on + strand at 164.004 kb on - strand at 164.111 kb on - strand at 164.111 kb on - strand at 164.205 kb on + strand at 164.213 kb on - strand at 164.213 kb on - strand at 164.268 kb on + strand at 164.274 kb on + strand at 164.571 kb on - strand, within Shewana3_4281 at 164.705 kb on - strand, within Shewana3_4281 at 164.792 kb on - strand, within Shewana3_4281 at 165.167 kb on + strand, within Shewana3_4281 at 165.172 kb on + strand, within Shewana3_4281 at 165.225 kb on - strand, within Shewana3_4281 at 165.442 kb on + strand, within Shewana3_4281 at 165.482 kb on - strand, within Shewana3_4281 at 165.519 kb on - strand, within Shewana3_4281 at 165.534 kb on + strand, within Shewana3_4281 at 165.540 kb on - strand, within Shewana3_4281 at 165.566 kb on + strand, within Shewana3_4281 at 165.656 kb on - strand, within Shewana3_4281 at 165.806 kb on - strand, within Shewana3_4281 at 165.859 kb on - strand, within Shewana3_4281 at 165.918 kb on + strand, within Shewana3_4281 at 166.045 kb on - strand, within Shewana3_4281 at 166.064 kb on - strand, within Shewana3_4281 at 166.165 kb on - strand, within Shewana3_4281 at 166.171 kb on - strand, within Shewana3_4281 at 166.211 kb on - strand, within Shewana3_4281 at 166.223 kb on - strand, within Shewana3_4281 at 166.282 kb on - strand at 167.316 kb on + strand, within Shewana3_4283 at 167.324 kb on - strand, within Shewana3_4283
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 163,152 - Shewana3_4280 0.62 -0.8 163,201 - Shewana3_4280 0.64 -2.2 163,304 + Shewana3_4280 0.68 -0.9 163,467 + Shewana3_4280 0.75 -1.3 163,532 + Shewana3_4280 0.78 -0.8 163,532 + Shewana3_4280 0.78 +0.2 163,540 - Shewana3_4280 0.78 -1.6 163,540 - Shewana3_4280 0.78 -0.3 163,556 + Shewana3_4280 0.79 -0.4 163,557 + Shewana3_4280 0.79 -0.2 163,565 - Shewana3_4280 0.79 -2.5 163,640 + Shewana3_4280 0.82 -1.9 163,662 + Shewana3_4280 0.83 -2.2 163,667 + Shewana3_4280 0.83 -1.4 163,825 - -0.3 163,825 - +0.3 163,825 - -0.6 163,897 + +0.5 164,004 - +0.3 164,111 - -1.4 164,111 - -0.4 164,205 + +0.0 164,213 - +1.2 164,213 - -0.5 164,268 + -0.0 164,274 + -1.1 164,571 - Shewana3_4281 0.21 -1.3 164,705 - Shewana3_4281 0.26 +0.4 164,792 - Shewana3_4281 0.30 -2.0 165,167 + Shewana3_4281 0.45 -0.4 165,172 + Shewana3_4281 0.46 +0.4 165,225 - Shewana3_4281 0.48 -1.0 165,442 + Shewana3_4281 0.57 -0.5 165,482 - Shewana3_4281 0.58 -0.0 165,519 - Shewana3_4281 0.60 -0.4 165,534 + Shewana3_4281 0.61 -1.5 165,540 - Shewana3_4281 0.61 -1.0 165,566 + Shewana3_4281 0.62 +0.3 165,656 - Shewana3_4281 0.66 -1.4 165,806 - Shewana3_4281 0.72 -2.0 165,859 - Shewana3_4281 0.74 -0.6 165,918 + Shewana3_4281 0.76 -0.2 166,045 - Shewana3_4281 0.82 -1.3 166,064 - Shewana3_4281 0.82 -2.2 166,165 - Shewana3_4281 0.87 -2.4 166,171 - Shewana3_4281 0.87 +0.0 166,211 - Shewana3_4281 0.89 -0.1 166,223 - Shewana3_4281 0.89 -1.4 166,282 - -0.0 167,316 + Shewana3_4283 0.12 +1.1 167,324 - Shewana3_4283 0.16 +0.5
Or see this region's nucleotide sequence