Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4276 and Shewana3_4277 are separated by 120 nucleotides Shewana3_4277 and Shewana3_4278 are separated by 75 nucleotides
Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808
_4276
Shewana3_4277: Shewana3_4277 - OmpA/MotB domain-containing protein (RefSeq), at 158,929 to 159,672
_4277
Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467
_4278
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.143 kb on - strand, within Shewana3_4276 at 158.426 kb on + strand, within Shewana3_4276 at 158.445 kb on - strand, within Shewana3_4276 at 158.453 kb on - strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.618 kb on - strand, within Shewana3_4276 at 158.620 kb on - strand, within Shewana3_4276 at 158.806 kb on - strand at 159.088 kb on + strand, within Shewana3_4277 at 159.088 kb on + strand, within Shewana3_4277 at 159.096 kb on + strand, within Shewana3_4277 at 159.391 kb on - strand, within Shewana3_4277 at 159.449 kb on + strand, within Shewana3_4277 at 159.526 kb on - strand, within Shewana3_4277 at 159.612 kb on + strand at 159.635 kb on + strand at 159.663 kb on + strand at 159.671 kb on - strand at 159.671 kb on - strand at 159.765 kb on + strand at 159.902 kb on + strand, within Shewana3_4278 at 160.023 kb on + strand, within Shewana3_4278 at 160.036 kb on + strand, within Shewana3_4278 at 160.187 kb on - strand, within Shewana3_4278 at 160.311 kb on + strand, within Shewana3_4278 at 160.389 kb on + strand, within Shewana3_4278 at 160.430 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.451 kb on + strand at 160.451 kb on + strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.499 kb on - strand at 160.547 kb on + strand at 160.605 kb on + strand at 160.608 kb on - strand at 160.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 158,143 - Shewana3_4276 0.24 -1.0 158,426 + Shewana3_4276 0.56 -2.2 158,445 - Shewana3_4276 0.58 -1.2 158,453 - Shewana3_4276 0.59 +1.0 158,550 + Shewana3_4276 0.70 +0.4 158,550 + Shewana3_4276 0.70 +0.4 158,550 + Shewana3_4276 0.70 +0.1 158,558 - Shewana3_4276 0.71 +2.0 158,558 - Shewana3_4276 0.71 -2.8 158,558 - Shewana3_4276 0.71 -0.6 158,618 - Shewana3_4276 0.78 +2.0 158,620 - Shewana3_4276 0.78 -1.7 158,806 - -1.2 159,088 + Shewana3_4277 0.21 +0.5 159,088 + Shewana3_4277 0.21 +0.9 159,096 + Shewana3_4277 0.22 +0.3 159,391 - Shewana3_4277 0.62 -2.1 159,449 + Shewana3_4277 0.70 +0.3 159,526 - Shewana3_4277 0.80 +0.2 159,612 + +0.3 159,635 + +0.1 159,663 + +0.4 159,671 - -0.5 159,671 - -0.6 159,765 + -1.1 159,902 + Shewana3_4278 0.21 -0.8 160,023 + Shewana3_4278 0.38 +0.5 160,036 + Shewana3_4278 0.40 +0.3 160,187 - Shewana3_4278 0.61 +0.5 160,311 + Shewana3_4278 0.78 -0.0 160,389 + Shewana3_4278 0.89 -0.4 160,430 + -0.0 160,446 + +1.1 160,446 + +0.9 160,446 + +0.2 160,451 + +0.6 160,451 + +0.1 160,454 - -3.6 160,454 - -0.6 160,454 - -0.3 160,454 - -0.8 160,499 - -0.7 160,547 + -0.1 160,605 + -0.7 160,608 - -0.1 160,664 + -1.3
Or see this region's nucleotide sequence