Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4273 and Shewana3_4274 are separated by 13 nucleotides Shewana3_4274 and Shewana3_4275 are separated by 87 nucleotides
Shewana3_4273: Shewana3_4273 - hypothetical protein (RefSeq), at 155,350 to 156,240
_4273
Shewana3_4274: Shewana3_4274 - hypothetical protein (RefSeq), at 156,254 to 156,799
_4274
Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792
_4275
Position (kb) 156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 155.316 kb on - strand at 155.413 kb on - strand at 155.430 kb on - strand at 155.473 kb on + strand, within Shewana3_4273 at 155.577 kb on - strand, within Shewana3_4273 at 155.577 kb on - strand, within Shewana3_4273 at 155.732 kb on + strand, within Shewana3_4273 at 155.897 kb on + strand, within Shewana3_4273 at 155.968 kb on + strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 156.038 kb on + strand, within Shewana3_4273 at 156.134 kb on - strand, within Shewana3_4273 at 156.210 kb on - strand at 156.324 kb on + strand, within Shewana3_4274 at 156.357 kb on - strand, within Shewana3_4274 at 156.437 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.518 kb on - strand, within Shewana3_4274 at 156.602 kb on + strand, within Shewana3_4274 at 156.685 kb on + strand, within Shewana3_4274 at 156.741 kb on + strand, within Shewana3_4274 at 157.103 kb on - strand, within Shewana3_4275 at 157.103 kb on - strand, within Shewana3_4275 at 157.120 kb on - strand, within Shewana3_4275 at 157.129 kb on - strand, within Shewana3_4275 at 157.507 kb on - strand, within Shewana3_4275 at 157.515 kb on - strand, within Shewana3_4275 at 157.601 kb on - strand, within Shewana3_4275 at 157.614 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 155,316 - -2.9 155,413 - -1.1 155,430 - -1.7 155,473 + Shewana3_4273 0.14 +1.1 155,577 - Shewana3_4273 0.25 -3.1 155,577 - Shewana3_4273 0.25 -1.8 155,732 + Shewana3_4273 0.43 +0.4 155,897 + Shewana3_4273 0.61 -0.3 155,968 + Shewana3_4273 0.69 +0.1 155,969 - Shewana3_4273 0.69 -0.1 155,969 - Shewana3_4273 0.69 +0.4 156,038 + Shewana3_4273 0.77 +0.2 156,134 - Shewana3_4273 0.88 -0.8 156,210 - -0.6 156,324 + Shewana3_4274 0.13 +0.3 156,357 - Shewana3_4274 0.19 +1.0 156,437 + Shewana3_4274 0.34 -0.9 156,469 + Shewana3_4274 0.39 +0.1 156,469 + Shewana3_4274 0.39 +1.3 156,518 - Shewana3_4274 0.48 +0.2 156,602 + Shewana3_4274 0.64 +0.6 156,685 + Shewana3_4274 0.79 +0.6 156,741 + Shewana3_4274 0.89 +0.7 157,103 - Shewana3_4275 0.24 +0.8 157,103 - Shewana3_4275 0.24 -0.1 157,120 - Shewana3_4275 0.26 +0.6 157,129 - Shewana3_4275 0.27 +0.5 157,507 - Shewana3_4275 0.68 +0.7 157,515 - Shewana3_4275 0.69 +0.9 157,601 - Shewana3_4275 0.79 +0.4 157,614 - Shewana3_4275 0.80 +0.4 157,694 - Shewana3_4275 0.89 -0.1 157,694 - Shewana3_4275 0.89 -0.2
Or see this region's nucleotide sequence