Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4253 and Shewana3_4254 overlap by 14 nucleotides Shewana3_4254 and Shewana3_4255 are separated by 423 nucleotides Shewana3_4255 and Shewana3_4256 are separated by 9 nucleotides
Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877
_4253
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855
_4255
Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134
_4256
Position (kb)
131
132
133
134 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 130.953 kb on - strand, within Shewana3_4253 at 131.049 kb on - strand, within Shewana3_4253 at 131.051 kb on + strand, within Shewana3_4253 at 131.114 kb on - strand, within Shewana3_4253 at 131.131 kb on + strand, within Shewana3_4253 at 131.206 kb on - strand, within Shewana3_4253 at 131.361 kb on - strand, within Shewana3_4253 at 131.419 kb on - strand, within Shewana3_4253 at 131.457 kb on + strand, within Shewana3_4253 at 131.476 kb on - strand, within Shewana3_4253 at 131.761 kb on - strand at 131.780 kb on - strand at 131.827 kb on + strand at 131.915 kb on - strand at 131.944 kb on + strand at 131.982 kb on - strand at 132.015 kb on - strand, within Shewana3_4254 at 132.042 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.066 kb on - strand, within Shewana3_4254 at 132.246 kb on + strand, within Shewana3_4254 at 132.404 kb on + strand, within Shewana3_4254 at 132.587 kb on + strand, within Shewana3_4254 at 132.597 kb on - strand, within Shewana3_4254 at 132.660 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.780 kb on - strand, within Shewana3_4254 at 132.898 kb on + strand, within Shewana3_4254 at 132.909 kb on + strand, within Shewana3_4254 at 132.917 kb on - strand, within Shewana3_4254 at 132.997 kb on - strand, within Shewana3_4254 at 133.282 kb on + strand at 133.655 kb on - strand, within Shewana3_4255 at 133.858 kb on - strand at 133.873 kb on + strand at 133.921 kb on + strand, within Shewana3_4256 at 134.038 kb on - strand, within Shewana3_4256
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 130,953 - Shewana3_4253 0.59 +0.1 131,049 - Shewana3_4253 0.63 +0.9 131,051 + Shewana3_4253 0.64 -2.0 131,114 - Shewana3_4253 0.66 -3.4 131,131 + Shewana3_4253 0.67 -1.2 131,206 - Shewana3_4253 0.70 +0.4 131,361 - Shewana3_4253 0.77 -2.0 131,419 - Shewana3_4253 0.80 -0.6 131,457 + Shewana3_4253 0.81 +0.4 131,476 - Shewana3_4253 0.82 -0.8 131,761 - +0.6 131,780 - -0.4 131,827 + -1.0 131,915 - +1.5 131,944 + -1.3 131,982 - +0.2 132,015 - Shewana3_4254 0.12 +0.1 132,042 + Shewana3_4254 0.14 -1.7 132,060 + Shewana3_4254 0.15 -1.5 132,060 + Shewana3_4254 0.15 -2.1 132,066 - Shewana3_4254 0.16 +0.1 132,246 + Shewana3_4254 0.30 +0.7 132,404 + Shewana3_4254 0.43 -0.5 132,587 + Shewana3_4254 0.57 -0.9 132,597 - Shewana3_4254 0.58 -0.4 132,660 + Shewana3_4254 0.63 -0.5 132,714 + Shewana3_4254 0.67 +0.1 132,714 + Shewana3_4254 0.67 -0.0 132,745 - Shewana3_4254 0.70 -1.0 132,745 - Shewana3_4254 0.70 -1.0 132,780 - Shewana3_4254 0.72 -0.8 132,898 + Shewana3_4254 0.82 -0.2 132,909 + Shewana3_4254 0.83 -1.4 132,917 - Shewana3_4254 0.83 +0.3 132,997 - Shewana3_4254 0.89 -1.8 133,282 + -1.8 133,655 - Shewana3_4255 0.34 +0.3 133,858 - -0.5 133,873 + -0.4 133,921 + Shewana3_4256 0.21 +0.2 134,038 - Shewana3_4256 0.64 +0.6
Or see this region's nucleotide sequence