Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4246 and Shewana3_4247 are separated by 596 nucleotides Shewana3_4247 and Shewana3_4248 are separated by 8 nucleotides
Shewana3_4246: Shewana3_4246 - XRE family transcriptional regulator (RefSeq), at 121,277 to 121,765
_4246
Shewana3_4247: Shewana3_4247 - TatD-related deoxyribonuclease (RefSeq), at 122,362 to 123,075
_4247
Shewana3_4248: Shewana3_4248 - hypothetical protein (RefSeq), at 123,084 to 124,388
_4248
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-2
-1
0
1 at 121.972 kb on - strand at 122.091 kb on - strand at 122.305 kb on + strand at 122.305 kb on + strand at 122.305 kb on + strand at 122.305 kb on + strand at 122.313 kb on - strand at 122.613 kb on - strand, within Shewana3_4247 at 122.917 kb on + strand, within Shewana3_4247 at 123.033 kb on - strand at 123.035 kb on - strand at 123.122 kb on + strand at 123.373 kb on - strand, within Shewana3_4248 at 123.460 kb on + strand, within Shewana3_4248 at 123.727 kb on - strand, within Shewana3_4248 at 123.762 kb on - strand, within Shewana3_4248 at 123.856 kb on + strand, within Shewana3_4248 at 123.925 kb on + strand, within Shewana3_4248 at 123.978 kb on - strand, within Shewana3_4248 at 124.060 kb on + strand, within Shewana3_4248
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 121,972 - -0.5 122,091 - -2.7 122,305 + -0.8 122,305 + -0.4 122,305 + -2.5 122,305 + +1.0 122,313 - +0.4 122,613 - Shewana3_4247 0.35 +0.8 122,917 + Shewana3_4247 0.78 -0.0 123,033 - -0.1 123,035 - -0.3 123,122 + -1.8 123,373 - Shewana3_4248 0.22 -0.3 123,460 + Shewana3_4248 0.29 -0.7 123,727 - Shewana3_4248 0.49 -0.2 123,762 - Shewana3_4248 0.52 -0.3 123,856 + Shewana3_4248 0.59 -1.4 123,925 + Shewana3_4248 0.64 -1.2 123,978 - Shewana3_4248 0.69 +0.4 124,060 + Shewana3_4248 0.75 -0.6
Or see this region's nucleotide sequence