Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4241 and Shewana3_4242 overlap by 1 nucleotides Shewana3_4242 and Shewana3_4243 are separated by 11 nucleotides Shewana3_4243 and Shewana3_4244 are separated by 17 nucleotides
Shewana3_4241: Shewana3_4241 - restriction modification system DNA specificity subunit (RefSeq), at 114,945 to 116,180
_4241
Shewana3_4242: Shewana3_4242 - hypothetical protein (RefSeq), at 116,180 to 116,785
_4242
Shewana3_4243: Shewana3_4243 - hypothetical protein (RefSeq), at 116,797 to 117,114
_4243
Shewana3_4244: Shewana3_4244 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 117,132 to 120,386
_4244
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 115.835 kb on - strand, within Shewana3_4241 at 115.840 kb on - strand, within Shewana3_4241 at 115.840 kb on - strand, within Shewana3_4241 at 115.845 kb on + strand, within Shewana3_4241 at 115.941 kb on + strand, within Shewana3_4241 at 115.998 kb on + strand, within Shewana3_4241 at 116.183 kb on - strand at 116.251 kb on - strand, within Shewana3_4242 at 116.280 kb on - strand, within Shewana3_4242 at 116.285 kb on - strand, within Shewana3_4242 at 116.527 kb on - strand, within Shewana3_4242 at 116.607 kb on + strand, within Shewana3_4242 at 116.665 kb on + strand, within Shewana3_4242 at 116.721 kb on + strand, within Shewana3_4242 at 116.721 kb on + strand, within Shewana3_4242 at 116.856 kb on + strand, within Shewana3_4243 at 116.866 kb on + strand, within Shewana3_4243 at 116.918 kb on + strand, within Shewana3_4243 at 117.050 kb on + strand, within Shewana3_4243 at 117.060 kb on + strand, within Shewana3_4243 at 117.068 kb on - strand, within Shewana3_4243 at 117.153 kb on + strand at 117.158 kb on + strand at 117.180 kb on - strand at 117.294 kb on - strand at 117.302 kb on - strand at 117.361 kb on + strand at 117.361 kb on + strand at 117.361 kb on + strand at 117.369 kb on - strand at 117.369 kb on - strand at 117.371 kb on + strand at 117.423 kb on + strand at 117.565 kb on + strand, within Shewana3_4244 at 117.565 kb on + strand, within Shewana3_4244 at 117.586 kb on - strand, within Shewana3_4244 at 117.593 kb on - strand, within Shewana3_4244 at 117.656 kb on - strand, within Shewana3_4244 at 117.667 kb on - strand, within Shewana3_4244 at 117.851 kb on + strand, within Shewana3_4244 at 118.003 kb on - strand, within Shewana3_4244 at 118.018 kb on - strand, within Shewana3_4244 at 118.108 kb on - strand, within Shewana3_4244
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 115,835 - Shewana3_4241 0.72 -1.9 115,840 - Shewana3_4241 0.72 -1.2 115,840 - Shewana3_4241 0.72 -0.7 115,845 + Shewana3_4241 0.73 +0.5 115,941 + Shewana3_4241 0.81 +0.9 115,998 + Shewana3_4241 0.85 -0.0 116,183 - -1.1 116,251 - Shewana3_4242 0.12 -0.4 116,280 - Shewana3_4242 0.17 -0.6 116,285 - Shewana3_4242 0.17 -1.8 116,527 - Shewana3_4242 0.57 +2.0 116,607 + Shewana3_4242 0.70 +0.7 116,665 + Shewana3_4242 0.80 +0.2 116,721 + Shewana3_4242 0.89 +0.1 116,721 + Shewana3_4242 0.89 +0.2 116,856 + Shewana3_4243 0.19 +0.3 116,866 + Shewana3_4243 0.22 +0.3 116,918 + Shewana3_4243 0.38 +0.4 117,050 + Shewana3_4243 0.80 +0.7 117,060 + Shewana3_4243 0.83 +0.5 117,068 - Shewana3_4243 0.85 +0.1 117,153 + -0.9 117,158 + -0.6 117,180 - -1.8 117,294 - -1.5 117,302 - -0.6 117,361 + -0.2 117,361 + +0.3 117,361 + -0.4 117,369 - -1.1 117,369 - +0.4 117,371 + -0.8 117,423 + +0.1 117,565 + Shewana3_4244 0.13 +0.4 117,565 + Shewana3_4244 0.13 +0.4 117,586 - Shewana3_4244 0.14 +0.0 117,593 - Shewana3_4244 0.14 -1.1 117,656 - Shewana3_4244 0.16 -1.0 117,667 - Shewana3_4244 0.16 -2.0 117,851 + Shewana3_4244 0.22 -0.1 118,003 - Shewana3_4244 0.27 -0.8 118,018 - Shewana3_4244 0.27 +2.4 118,108 - Shewana3_4244 0.30 -0.0
Or see this region's nucleotide sequence