Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4215 and Shewana3_4216 are separated by 68 nucleotides Shewana3_4216 and Shewana3_4217 are separated by 128 nucleotides Shewana3_4217 and Shewana3_4218 are separated by 30 nucleotides
Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583
_4215
Shewana3_4216: Shewana3_4216 - hypothetical protein (RefSeq), at 87,652 to 88,143
_4216
Shewana3_4217: Shewana3_4217 - putative signal transduction protein (RefSeq), at 88,272 to 88,994
_4217
Shewana3_4218: Shewana3_4218 - Type IV secretory pathway VirB4 components-like protein (RefSeq), at 89,025 to 91,709
_4218
Position (kb) 88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 87.407 kb on + strand at 87.488 kb on + strand at 87.579 kb on + strand at 87.823 kb on + strand, within Shewana3_4216 at 87.831 kb on - strand, within Shewana3_4216 at 87.886 kb on + strand, within Shewana3_4216 at 87.956 kb on - strand, within Shewana3_4216 at 88.012 kb on - strand, within Shewana3_4216 at 88.050 kb on + strand, within Shewana3_4216 at 88.216 kb on - strand at 88.445 kb on + strand, within Shewana3_4217 at 88.585 kb on - strand, within Shewana3_4217 at 88.648 kb on + strand, within Shewana3_4217 at 88.771 kb on + strand, within Shewana3_4217 at 88.997 kb on + strand at 89.197 kb on - strand at 89.452 kb on - strand, within Shewana3_4218 at 89.656 kb on + strand, within Shewana3_4218 at 89.656 kb on + strand, within Shewana3_4218 at 89.666 kb on + strand, within Shewana3_4218 at 89.674 kb on - strand, within Shewana3_4218 at 89.818 kb on - strand, within Shewana3_4218 at 89.931 kb on - strand, within Shewana3_4218
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 87,407 + -0.1 87,488 + -0.3 87,579 + -1.5 87,823 + Shewana3_4216 0.35 -0.0 87,831 - Shewana3_4216 0.36 +0.0 87,886 + Shewana3_4216 0.48 -0.2 87,956 - Shewana3_4216 0.62 -0.7 88,012 - Shewana3_4216 0.73 +0.1 88,050 + Shewana3_4216 0.81 -1.0 88,216 - -0.8 88,445 + Shewana3_4217 0.24 -0.8 88,585 - Shewana3_4217 0.43 -1.0 88,648 + Shewana3_4217 0.52 -3.1 88,771 + Shewana3_4217 0.69 -1.6 88,997 + -1.2 89,197 - -0.5 89,452 - Shewana3_4218 0.16 +0.2 89,656 + Shewana3_4218 0.24 +0.2 89,656 + Shewana3_4218 0.24 -0.6 89,666 + Shewana3_4218 0.24 -0.5 89,674 - Shewana3_4218 0.24 +0.8 89,818 - Shewana3_4218 0.30 +0.3 89,931 - Shewana3_4218 0.34 +0.3
Or see this region's nucleotide sequence