Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4206 and Shewana3_4207 are separated by 2 nucleotides Shewana3_4207 and Shewana3_4208 are separated by 68 nucleotides
Shewana3_4206: Shewana3_4206 - hypothetical protein (RefSeq), at 71,303 to 75,577
_4206
Shewana3_4207: Shewana3_4207 - TraU family protein (RefSeq), at 75,580 to 76,659
_4207
Shewana3_4208: Shewana3_4208 - hypothetical protein (RefSeq), at 76,728 to 78,023
_4208
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 74.733 kb on + strand, within Shewana3_4206 at 74.840 kb on + strand, within Shewana3_4206 at 74.897 kb on - strand, within Shewana3_4206 at 75.036 kb on - strand, within Shewana3_4206 at 75.148 kb on - strand, within Shewana3_4206 at 75.204 kb on - strand at 75.277 kb on - strand at 75.676 kb on - strand at 75.841 kb on - strand, within Shewana3_4207 at 75.901 kb on + strand, within Shewana3_4207 at 75.908 kb on + strand, within Shewana3_4207 at 75.916 kb on - strand, within Shewana3_4207 at 76.424 kb on - strand, within Shewana3_4207 at 76.429 kb on - strand, within Shewana3_4207 at 76.598 kb on - strand at 76.788 kb on + strand at 76.792 kb on - strand at 76.827 kb on - strand at 76.957 kb on + strand, within Shewana3_4208 at 76.965 kb on - strand, within Shewana3_4208 at 77.078 kb on - strand, within Shewana3_4208 at 77.144 kb on - strand, within Shewana3_4208 at 77.185 kb on + strand, within Shewana3_4208 at 77.315 kb on + strand, within Shewana3_4208 at 77.342 kb on - strand, within Shewana3_4208 at 77.372 kb on + strand, within Shewana3_4208 at 77.401 kb on - strand, within Shewana3_4208 at 77.402 kb on - strand, within Shewana3_4208 at 77.417 kb on + strand, within Shewana3_4208
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 74,733 + Shewana3_4206 0.80 +1.0 74,840 + Shewana3_4206 0.83 +0.4 74,897 - Shewana3_4206 0.84 +0.3 75,036 - Shewana3_4206 0.87 -0.2 75,148 - Shewana3_4206 0.90 -2.2 75,204 - -1.1 75,277 - -0.1 75,676 - -0.3 75,841 - Shewana3_4207 0.24 -1.0 75,901 + Shewana3_4207 0.30 -1.0 75,908 + Shewana3_4207 0.30 -0.2 75,916 - Shewana3_4207 0.31 -1.7 76,424 - Shewana3_4207 0.78 -0.8 76,429 - Shewana3_4207 0.79 -0.6 76,598 - +0.7 76,788 + -1.0 76,792 - -0.1 76,827 - +0.5 76,957 + Shewana3_4208 0.18 +0.2 76,965 - Shewana3_4208 0.18 +1.1 77,078 - Shewana3_4208 0.27 +0.6 77,144 - Shewana3_4208 0.32 -0.4 77,185 + Shewana3_4208 0.35 +0.4 77,315 + Shewana3_4208 0.45 -0.5 77,342 - Shewana3_4208 0.47 -1.1 77,372 + Shewana3_4208 0.50 -0.2 77,401 - Shewana3_4208 0.52 -0.5 77,402 - Shewana3_4208 0.52 -1.0 77,417 + Shewana3_4208 0.53 +0.1
Or see this region's nucleotide sequence