Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4196 and Shewana3_4197 are separated by 111 nucleotides Shewana3_4197 and Shewana3_4198 are separated by 506 nucleotides Shewana3_4198 and Shewana3_4199 are separated by 775 nucleotides
Shewana3_4196: Shewana3_4196 - hypothetical protein (RefSeq), at 58,457 to 58,891
_4196
Shewana3_4197: Shewana3_4197 - putative toxin of addiction system (RefSeq), at 59,003 to 59,368
_4197
Shewana3_4198: Shewana3_4198 - hypothetical protein (RefSeq), at 59,875 to 60,306
_4198
Shewana3_4199: Shewana3_4199 - hypothetical protein (RefSeq), at 61,082 to 62,101
_4199
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 59.209 kb on + strand, within Shewana3_4197 at 59.366 kb on - strand at 59.515 kb on - strand at 59.524 kb on - strand at 59.645 kb on + strand at 59.754 kb on - strand at 59.762 kb on + strand at 59.856 kb on + strand at 59.859 kb on - strand at 59.859 kb on - strand at 60.007 kb on - strand, within Shewana3_4198 at 60.047 kb on - strand, within Shewana3_4198 at 60.060 kb on + strand, within Shewana3_4198 at 60.140 kb on - strand, within Shewana3_4198 at 60.330 kb on + strand at 60.353 kb on + strand at 60.355 kb on + strand at 60.362 kb on + strand at 60.363 kb on - strand at 60.370 kb on - strand at 60.370 kb on - strand at 60.372 kb on + strand at 60.372 kb on + strand at 60.372 kb on + strand at 60.467 kb on - strand at 60.501 kb on - strand at 60.527 kb on + strand at 60.548 kb on - strand at 61.001 kb on + strand at 61.009 kb on - strand at 61.009 kb on - strand at 61.188 kb on - strand, within Shewana3_4199 at 61.226 kb on + strand, within Shewana3_4199 at 61.234 kb on - strand, within Shewana3_4199 at 61.234 kb on - strand, within Shewana3_4199 at 61.234 kb on - strand, within Shewana3_4199 at 61.299 kb on + strand, within Shewana3_4199
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 59,209 + Shewana3_4197 0.56 -0.5 59,366 - +0.7 59,515 - +0.1 59,524 - -3.1 59,645 + -0.7 59,754 - +0.3 59,762 + +0.2 59,856 + -1.0 59,859 - +1.0 59,859 - +0.8 60,007 - Shewana3_4198 0.31 +0.7 60,047 - Shewana3_4198 0.40 +1.1 60,060 + Shewana3_4198 0.43 +0.2 60,140 - Shewana3_4198 0.61 +0.7 60,330 + +0.4 60,353 + +0.2 60,355 + -0.5 60,362 + -0.2 60,363 - -0.1 60,370 - +0.7 60,370 - +1.2 60,372 + -0.0 60,372 + +0.2 60,372 + -0.0 60,467 - -0.0 60,501 - +0.7 60,527 + -0.1 60,548 - +0.6 61,001 + -2.0 61,009 - +0.5 61,009 - +0.7 61,188 - Shewana3_4199 0.10 +0.4 61,226 + Shewana3_4199 0.14 -1.0 61,234 - Shewana3_4199 0.15 +0.7 61,234 - Shewana3_4199 0.15 +0.0 61,234 - Shewana3_4199 0.15 +0.6 61,299 + Shewana3_4199 0.21 -2.0
Or see this region's nucleotide sequence