Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4188 and Shewana3_4189 are separated by 66 nucleotides Shewana3_4189 and Shewana3_4190 are separated by 91 nucleotides Shewana3_4190 and Shewana3_4191 are separated by 71 nucleotides Shewana3_4191 and Shewana3_4192 are separated by 511 nucleotides
Shewana3_4188: Shewana3_4188 - hypothetical protein (RefSeq), at 52,776 to 53,429
_4188
Shewana3_4189: Shewana3_4189 - hypothetical protein (RefSeq), at 53,496 to 54,005
_4189
Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537
_4190
Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833
_4191
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Position (kb) 54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 53.150 kb on + strand, within Shewana3_4188 at 53.158 kb on - strand, within Shewana3_4188 at 53.158 kb on - strand, within Shewana3_4188 at 53.175 kb on + strand, within Shewana3_4188 at 53.299 kb on - strand, within Shewana3_4188 at 53.494 kb on - strand at 53.502 kb on - strand at 53.504 kb on + strand at 53.601 kb on + strand, within Shewana3_4189 at 53.606 kb on - strand, within Shewana3_4189 at 53.606 kb on - strand, within Shewana3_4189 at 53.652 kb on - strand, within Shewana3_4189 at 53.812 kb on - strand, within Shewana3_4189 at 53.814 kb on + strand, within Shewana3_4189 at 53.815 kb on - strand, within Shewana3_4189 at 53.820 kb on - strand, within Shewana3_4189 at 53.822 kb on - strand, within Shewana3_4189 at 53.939 kb on - strand, within Shewana3_4189 at 53.953 kb on - strand, within Shewana3_4189 at 54.038 kb on + strand at 54.038 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.054 kb on + strand at 54.062 kb on - strand at 54.168 kb on - strand, within Shewana3_4190 at 54.189 kb on - strand, within Shewana3_4190 at 54.193 kb on - strand, within Shewana3_4190 at 54.240 kb on + strand, within Shewana3_4190 at 54.248 kb on - strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.282 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.546 kb on + strand at 54.547 kb on - strand at 54.598 kb on - strand at 54.663 kb on - strand, within Shewana3_4191 at 54.682 kb on + strand, within Shewana3_4191 at 54.714 kb on - strand, within Shewana3_4191 at 54.724 kb on - strand, within Shewana3_4191 at 54.842 kb on - strand at 54.872 kb on + strand at 54.938 kb on - strand at 55.342 kb on - strand at 55.381 kb on + strand at 55.404 kb on + strand, within Shewana3_4192 at 55.412 kb on - strand, within Shewana3_4192
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 53,150 + Shewana3_4188 0.57 +0.5 53,158 - Shewana3_4188 0.58 -0.4 53,158 - Shewana3_4188 0.58 +0.7 53,175 + Shewana3_4188 0.61 +0.4 53,299 - Shewana3_4188 0.80 -2.0 53,494 - +0.5 53,502 - +1.2 53,504 + -0.6 53,601 + Shewana3_4189 0.21 -2.9 53,606 - Shewana3_4189 0.22 +0.6 53,606 - Shewana3_4189 0.22 +0.5 53,652 - Shewana3_4189 0.31 +0.7 53,812 - Shewana3_4189 0.62 +0.7 53,814 + Shewana3_4189 0.62 -1.3 53,815 - Shewana3_4189 0.63 +0.7 53,820 - Shewana3_4189 0.64 +0.7 53,822 - Shewana3_4189 0.64 +0.6 53,939 - Shewana3_4189 0.87 +0.4 53,953 - Shewana3_4189 0.90 +0.9 54,038 + +0.1 54,038 + -1.1 54,039 + -0.0 54,039 + +0.4 54,039 + -0.3 54,039 + +1.0 54,046 - +0.3 54,046 - +1.4 54,046 - +0.5 54,046 - +0.4 54,046 - +0.4 54,054 + -1.2 54,062 - +0.4 54,168 - Shewana3_4190 0.16 +1.1 54,189 - Shewana3_4190 0.21 +0.6 54,193 - Shewana3_4190 0.22 +1.5 54,240 + Shewana3_4190 0.32 +0.1 54,248 - Shewana3_4190 0.34 +0.3 54,267 + Shewana3_4190 0.39 +0.0 54,267 + Shewana3_4190 0.39 -0.1 54,275 - Shewana3_4190 0.40 +0.0 54,275 - Shewana3_4190 0.40 +0.8 54,282 + Shewana3_4190 0.42 -0.2 54,483 + Shewana3_4190 0.88 +0.3 54,483 + Shewana3_4190 0.88 +0.8 54,483 + Shewana3_4190 0.88 +0.3 54,546 + -0.1 54,547 - +0.6 54,598 - +1.0 54,663 - Shewana3_4191 0.24 +0.7 54,682 + Shewana3_4191 0.32 -2.3 54,714 - Shewana3_4191 0.47 +1.3 54,724 - Shewana3_4191 0.51 +0.7 54,842 - +1.5 54,872 + -4.1 54,938 - +0.5 55,342 - +0.8 55,381 + -0.7 55,404 + Shewana3_4192 0.14 -1.3 55,412 - Shewana3_4192 0.16 -0.1
Or see this region's nucleotide sequence