Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4181 and Shewana3_4182 are separated by 354 nucleotides Shewana3_4182 and Shewana3_4183 are separated by 71 nucleotides Shewana3_4183 and Shewana3_4184 are separated by 82 nucleotides
Shewana3_4181: Shewana3_4181 - hypothetical protein (RefSeq), at 47,179 to 47,901
_4181
Shewana3_4182: Shewana3_4182 - hypothetical protein (RefSeq), at 48,256 to 48,957
_4182
Shewana3_4183: Shewana3_4183 - lytic transglycosylase, catalytic (RefSeq), at 49,029 to 49,559
_4183
Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745
_4184
Position (kb)
48
49 Strain fitness (log2 ratio)
-2
-1
0
1 at 47.298 kb on + strand, within Shewana3_4181 at 47.414 kb on - strand, within Shewana3_4181 at 47.517 kb on + strand, within Shewana3_4181 at 47.547 kb on + strand, within Shewana3_4181 at 47.671 kb on + strand, within Shewana3_4181 at 47.689 kb on - strand, within Shewana3_4181 at 47.699 kb on - strand, within Shewana3_4181 at 48.385 kb on + strand, within Shewana3_4182 at 48.474 kb on - strand, within Shewana3_4182 at 48.609 kb on - strand, within Shewana3_4182 at 48.644 kb on + strand, within Shewana3_4182 at 48.652 kb on - strand, within Shewana3_4182 at 48.992 kb on - strand at 49.174 kb on - strand, within Shewana3_4183 at 49.266 kb on - strand, within Shewana3_4183 at 49.268 kb on + strand, within Shewana3_4183 at 49.273 kb on + strand, within Shewana3_4183 at 49.276 kb on - strand, within Shewana3_4183 at 49.281 kb on - strand, within Shewana3_4183 at 49.300 kb on - strand, within Shewana3_4183 at 49.459 kb on + strand, within Shewana3_4183 at 49.469 kb on + strand, within Shewana3_4183 at 49.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 47,298 + Shewana3_4181 0.16 -1.2 47,414 - Shewana3_4181 0.33 -0.7 47,517 + Shewana3_4181 0.47 -0.7 47,547 + Shewana3_4181 0.51 -0.8 47,671 + Shewana3_4181 0.68 -1.3 47,689 - Shewana3_4181 0.71 +0.7 47,699 - Shewana3_4181 0.72 -0.0 48,385 + Shewana3_4182 0.18 -0.9 48,474 - Shewana3_4182 0.31 -0.6 48,609 - Shewana3_4182 0.50 -1.3 48,644 + Shewana3_4182 0.55 -0.6 48,652 - Shewana3_4182 0.56 -2.0 48,992 - -0.2 49,174 - Shewana3_4183 0.27 -0.1 49,266 - Shewana3_4183 0.45 -0.8 49,268 + Shewana3_4183 0.45 +0.1 49,273 + Shewana3_4183 0.46 -0.2 49,276 - Shewana3_4183 0.47 -1.8 49,281 - Shewana3_4183 0.47 -0.4 49,300 - Shewana3_4183 0.51 -0.4 49,459 + Shewana3_4183 0.81 -0.8 49,469 + Shewana3_4183 0.83 -0.3 49,541 + -0.8
Or see this region's nucleotide sequence