Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4171 and Shewana3_4172 are separated by 580 nucleotides Shewana3_4172 and Shewana3_4173 overlap by 4 nucleotides Shewana3_4173 and Shewana3_4174 are separated by 205 nucleotides
Shewana3_4171: Shewana3_4171 - hypothetical protein (RefSeq), at 36,438 to 37,784
_4171
Shewana3_4172: Shewana3_4172 - DNA-directed DNA polymerase (RefSeq), at 38,365 to 39,615
_4172
Shewana3_4173: Shewana3_4173 - putative prophage repressor (RefSeq), at 39,612 to 40,346
_4173
Shewana3_4174: Shewana3_4174 - hypothetical protein (RefSeq), at 40,552 to 40,911
_4174
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.397 kb on - strand, within Shewana3_4171 at 37.583 kb on + strand, within Shewana3_4171 at 37.664 kb on - strand at 37.703 kb on - strand at 37.856 kb on + strand at 37.871 kb on + strand at 37.871 kb on + strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.898 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 38.031 kb on + strand at 38.093 kb on + strand at 38.106 kb on - strand at 38.117 kb on - strand at 38.122 kb on - strand at 38.140 kb on + strand at 38.335 kb on + strand at 38.478 kb on - strand at 38.528 kb on - strand, within Shewana3_4172 at 38.557 kb on - strand, within Shewana3_4172 at 38.602 kb on + strand, within Shewana3_4172 at 38.795 kb on + strand, within Shewana3_4172 at 38.803 kb on + strand, within Shewana3_4172 at 39.001 kb on + strand, within Shewana3_4172 at 39.059 kb on + strand, within Shewana3_4172 at 39.066 kb on + strand, within Shewana3_4172 at 39.164 kb on + strand, within Shewana3_4172 at 39.182 kb on - strand, within Shewana3_4172 at 39.183 kb on - strand, within Shewana3_4172 at 39.270 kb on - strand, within Shewana3_4172 at 39.463 kb on + strand, within Shewana3_4172 at 39.497 kb on + strand at 39.564 kb on + strand at 39.608 kb on - strand at 39.649 kb on - strand at 39.663 kb on - strand at 39.681 kb on + strand at 39.694 kb on + strand, within Shewana3_4173 at 39.747 kb on + strand, within Shewana3_4173 at 39.755 kb on - strand, within Shewana3_4173 at 39.784 kb on + strand, within Shewana3_4173 at 39.852 kb on + strand, within Shewana3_4173 at 40.203 kb on - strand, within Shewana3_4173 at 40.244 kb on + strand, within Shewana3_4173 at 40.304 kb on - strand at 40.459 kb on + strand at 40.467 kb on - strand at 40.477 kb on - strand at 40.526 kb on + strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 37,397 - Shewana3_4171 0.71 +0.6 37,583 + Shewana3_4171 0.85 +0.2 37,664 - -2.9 37,703 - -2.1 37,856 + -0.3 37,871 + -1.4 37,871 + -0.0 37,879 - -0.9 37,879 - +0.4 37,879 - -1.0 37,898 - -1.0 37,956 - -0.8 37,956 - -1.4 37,956 - -0.6 38,031 + -0.4 38,093 + -0.8 38,106 - +0.1 38,117 - -0.6 38,122 - -1.5 38,140 + +0.4 38,335 + -1.4 38,478 - -0.2 38,528 - Shewana3_4172 0.13 -0.6 38,557 - Shewana3_4172 0.15 -1.4 38,602 + Shewana3_4172 0.19 -2.0 38,795 + Shewana3_4172 0.34 -1.6 38,803 + Shewana3_4172 0.35 -1.6 39,001 + Shewana3_4172 0.51 -1.7 39,059 + Shewana3_4172 0.55 -1.1 39,066 + Shewana3_4172 0.56 -2.1 39,164 + Shewana3_4172 0.64 -1.3 39,182 - Shewana3_4172 0.65 +0.4 39,183 - Shewana3_4172 0.65 +0.1 39,270 - Shewana3_4172 0.72 +0.7 39,463 + Shewana3_4172 0.88 -0.9 39,497 + -1.6 39,564 + +0.8 39,608 - +0.5 39,649 - +0.0 39,663 - +0.7 39,681 + -3.2 39,694 + Shewana3_4173 0.11 -1.5 39,747 + Shewana3_4173 0.18 -0.3 39,755 - Shewana3_4173 0.19 +0.4 39,784 + Shewana3_4173 0.23 -1.6 39,852 + Shewana3_4173 0.33 -0.0 40,203 - Shewana3_4173 0.80 +0.1 40,244 + Shewana3_4173 0.86 +0.5 40,304 - +0.8 40,459 + +1.0 40,467 - -0.0 40,477 - -1.1 40,526 + -0.4 40,544 - +0.5 40,544 - +0.4 40,544 - +0.4 40,544 - +0.1 40,573 - +0.8
Or see this region's nucleotide sequence