Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4167 and Shewana3_4168 are separated by 343 nucleotides Shewana3_4168 and Shewana3_4169 are separated by 143 nucleotides
Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974
_4167
Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007
_4168
Shewana3_4169: Shewana3_4169 - hypothetical protein (RefSeq), at 34,151 to 35,299
_4169
Position (kb)
33
34
35 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 32.337 kb on + strand, within Shewana3_4167 at 32.597 kb on - strand, within Shewana3_4167 at 32.693 kb on - strand, within Shewana3_4167 at 32.863 kb on + strand, within Shewana3_4167 at 32.879 kb on + strand, within Shewana3_4167 at 33.053 kb on + strand at 33.075 kb on - strand at 33.075 kb on - strand at 33.111 kb on + strand at 33.119 kb on - strand at 33.250 kb on + strand at 33.281 kb on - strand at 33.525 kb on - strand, within Shewana3_4168 at 33.566 kb on + strand, within Shewana3_4168 at 33.726 kb on + strand, within Shewana3_4168 at 33.734 kb on - strand, within Shewana3_4168 at 33.793 kb on - strand, within Shewana3_4168 at 33.819 kb on + strand, within Shewana3_4168 at 34.002 kb on + strand at 34.100 kb on + strand at 34.240 kb on + strand at 34.240 kb on + strand at 34.249 kb on + strand at 34.509 kb on - strand, within Shewana3_4169 at 34.511 kb on + strand, within Shewana3_4169 at 34.729 kb on - strand, within Shewana3_4169 at 34.991 kb on + strand, within Shewana3_4169
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 32,337 + Shewana3_4167 0.27 -0.4 32,597 - Shewana3_4167 0.57 +0.4 32,693 - Shewana3_4167 0.68 -0.2 32,863 + Shewana3_4167 0.87 -0.7 32,879 + Shewana3_4167 0.89 -1.0 33,053 + +0.4 33,075 - -0.7 33,075 - +0.2 33,111 + +1.0 33,119 - +0.6 33,250 + -0.8 33,281 - -0.9 33,525 - Shewana3_4168 0.30 -0.5 33,566 + Shewana3_4168 0.36 +2.0 33,726 + Shewana3_4168 0.59 -2.6 33,734 - Shewana3_4168 0.60 -1.3 33,793 - Shewana3_4168 0.69 -2.1 33,819 + Shewana3_4168 0.73 +0.5 34,002 + +0.8 34,100 + +0.9 34,240 + +0.0 34,240 + +0.1 34,249 + -1.0 34,509 - Shewana3_4169 0.31 -0.6 34,511 + Shewana3_4169 0.31 -0.4 34,729 - Shewana3_4169 0.50 -0.2 34,991 + Shewana3_4169 0.73 -0.6
Or see this region's nucleotide sequence