Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4164 and Shewana3_4165 are separated by 428 nucleotides Shewana3_4165 and Shewana3_4166 are separated by 29 nucleotides Shewana3_4166 and Shewana3_4167 are separated by 94 nucleotides
Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536
_4164
Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375
_4165
Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007
_4166
Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974
_4167
Position (kb)
31
32
33 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 30.594 kb on - strand at 30.633 kb on + strand at 30.661 kb on - strand at 30.684 kb on - strand at 30.846 kb on + strand at 30.846 kb on + strand at 30.854 kb on - strand at 31.205 kb on + strand, within Shewana3_4165 at 31.369 kb on - strand at 31.646 kb on + strand, within Shewana3_4166 at 31.654 kb on - strand, within Shewana3_4166 at 31.725 kb on + strand, within Shewana3_4166 at 31.730 kb on + strand, within Shewana3_4166 at 31.779 kb on - strand, within Shewana3_4166 at 31.795 kb on + strand, within Shewana3_4166 at 31.875 kb on + strand, within Shewana3_4166 at 31.875 kb on + strand, within Shewana3_4166 at 31.942 kb on + strand, within Shewana3_4166 at 31.957 kb on + strand at 31.957 kb on + strand at 31.957 kb on + strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.977 kb on - strand at 31.979 kb on + strand at 31.979 kb on + strand at 31.979 kb on + strand at 31.987 kb on - strand at 31.987 kb on - strand at 31.987 kb on - strand at 31.987 kb on - strand at 32.033 kb on + strand at 32.053 kb on - strand at 32.053 kb on - strand at 32.053 kb on - strand at 32.108 kb on - strand at 32.285 kb on - strand, within Shewana3_4167 at 32.337 kb on + strand, within Shewana3_4167 at 32.597 kb on - strand, within Shewana3_4167 at 32.693 kb on - strand, within Shewana3_4167 at 32.863 kb on + strand, within Shewana3_4167 at 32.879 kb on + strand, within Shewana3_4167
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 30,594 - -0.4 30,633 + +0.0 30,661 - -0.4 30,684 - -0.6 30,846 + -0.9 30,846 + -0.6 30,854 - -0.8 31,205 + Shewana3_4165 0.58 -1.5 31,369 - +0.9 31,646 + Shewana3_4166 0.40 -1.1 31,654 - Shewana3_4166 0.41 -2.1 31,725 + Shewana3_4166 0.53 -1.4 31,730 + Shewana3_4166 0.54 -0.6 31,779 - Shewana3_4166 0.62 -0.5 31,795 + Shewana3_4166 0.65 -3.1 31,875 + Shewana3_4166 0.78 -1.8 31,875 + Shewana3_4166 0.78 -0.6 31,942 + Shewana3_4166 0.89 -0.6 31,957 + -1.0 31,957 + -0.6 31,957 + +2.0 31,965 - +0.6 31,965 - -0.1 31,977 - +0.9 31,979 + +0.1 31,979 + -2.7 31,979 + +0.4 31,987 - -0.2 31,987 - +0.3 31,987 - -0.6 31,987 - -0.0 32,033 + -2.4 32,053 - -0.8 32,053 - -0.5 32,053 - -1.5 32,108 - -0.5 32,285 - Shewana3_4167 0.21 +0.0 32,337 + Shewana3_4167 0.27 -0.4 32,597 - Shewana3_4167 0.57 +0.4 32,693 - Shewana3_4167 0.68 -0.2 32,863 + Shewana3_4167 0.87 -0.7 32,879 + Shewana3_4167 0.89 -1.0
Or see this region's nucleotide sequence