Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4155 and Shewana3_4156 overlap by 4 nucleotides Shewana3_4156 and Shewana3_4157 are separated by 631 nucleotides
Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447
_4155
Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784
_4156
Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315
_4157
Position (kb)
17
18
19 Strain fitness (log2 ratio)
-2
-1
0
1 at 16.453 kb on - strand at 16.569 kb on + strand at 16.602 kb on - strand, within Shewana3_4155 at 16.921 kb on + strand, within Shewana3_4155 at 16.951 kb on + strand, within Shewana3_4155 at 17.106 kb on + strand, within Shewana3_4155 at 17.120 kb on - strand, within Shewana3_4155 at 17.294 kb on + strand, within Shewana3_4155 at 17.302 kb on - strand, within Shewana3_4155 at 17.387 kb on + strand at 17.493 kb on - strand at 17.513 kb on - strand at 17.534 kb on + strand at 17.772 kb on - strand, within Shewana3_4156 at 17.941 kb on - strand, within Shewana3_4156 at 18.104 kb on + strand, within Shewana3_4156 at 18.109 kb on + strand, within Shewana3_4156 at 18.321 kb on + strand, within Shewana3_4156 at 18.408 kb on - strand, within Shewana3_4156 at 18.423 kb on + strand, within Shewana3_4156 at 18.560 kb on + strand, within Shewana3_4156 at 18.644 kb on - strand, within Shewana3_4156 at 19.050 kb on - strand at 19.276 kb on - strand at 19.422 kb on - strand at 19.422 kb on - strand at 19.427 kb on - strand at 19.497 kb on + strand at 19.695 kb on + strand, within Shewana3_4157 at 19.695 kb on + strand, within Shewana3_4157 at 19.708 kb on - strand, within Shewana3_4157
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 16,453 - -0.2 16,569 + -2.7 16,602 - Shewana3_4155 0.10 -0.4 16,921 + Shewana3_4155 0.44 -1.5 16,951 + Shewana3_4155 0.47 -1.6 17,106 + Shewana3_4155 0.64 -0.5 17,120 - Shewana3_4155 0.65 +0.1 17,294 + Shewana3_4155 0.84 -0.0 17,302 - Shewana3_4155 0.85 +1.0 17,387 + +0.6 17,493 - +0.4 17,513 - +0.4 17,534 + +1.3 17,772 - Shewana3_4156 0.24 -1.7 17,941 - Shewana3_4156 0.37 -0.2 18,104 + Shewana3_4156 0.49 +0.3 18,109 + Shewana3_4156 0.50 +1.0 18,321 + Shewana3_4156 0.65 +1.1 18,408 - Shewana3_4156 0.72 +0.1 18,423 + Shewana3_4156 0.73 -1.3 18,560 + Shewana3_4156 0.83 +0.8 18,644 - Shewana3_4156 0.89 +0.9 19,050 - -1.5 19,276 - -1.0 19,422 - +0.3 19,422 - -1.1 19,427 - -2.1 19,497 + -0.9 19,695 + Shewana3_4157 0.31 -0.8 19,695 + Shewana3_4157 0.31 -2.0 19,708 - Shewana3_4157 0.32 -0.1
Or see this region's nucleotide sequence