Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3683 and Shew_3684 overlap by 4 nucleotides Shew_3684 and Shew_3685 are separated by 2 nucleotides Shew_3685 and Shew_3686 overlap by 17 nucleotides
Shew_3683: Shew_3683 - extracellular solute-binding protein (RefSeq), at 4,387,826 to 4,388,638
_3683
Shew_3684: Shew_3684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 4,388,635 to 4,389,342
_3684
Shew_3685: Shew_3685 - ABC transporter-related protein (RefSeq), at 4,389,345 to 4,390,061
_3685
Shew_3686: Shew_3686 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 4,390,045 to 4,390,635
_3686
Position (kb)
4388
4389
4390 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4387.893 kb on + strand at 4388.002 kb on - strand, within Shew_3683 at 4388.174 kb on + strand, within Shew_3683 at 4388.237 kb on + strand, within Shew_3683 at 4388.358 kb on - strand, within Shew_3683 at 4388.384 kb on - strand, within Shew_3683 at 4388.578 kb on - strand at 4388.638 kb on + strand at 4388.654 kb on + strand at 4388.768 kb on + strand, within Shew_3684 at 4388.868 kb on - strand, within Shew_3684 at 4388.941 kb on + strand, within Shew_3684 at 4389.268 kb on - strand, within Shew_3684 at 4389.421 kb on - strand, within Shew_3685 at 4389.503 kb on - strand, within Shew_3685 at 4389.509 kb on + strand, within Shew_3685 at 4389.547 kb on + strand, within Shew_3685 at 4389.716 kb on + strand, within Shew_3685 at 4389.809 kb on - strand, within Shew_3685 at 4389.929 kb on - strand, within Shew_3685 at 4390.248 kb on - strand, within Shew_3686 at 4390.248 kb on - strand, within Shew_3686
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 4,387,893 + -1.1 4,388,002 - Shew_3683 0.22 +2.8 4,388,174 + Shew_3683 0.43 +0.6 4,388,237 + Shew_3683 0.51 +1.3 4,388,358 - Shew_3683 0.65 +1.3 4,388,384 - Shew_3683 0.69 +1.6 4,388,578 - +1.4 4,388,638 + +1.7 4,388,654 + +1.4 4,388,768 + Shew_3684 0.19 +1.8 4,388,868 - Shew_3684 0.33 +1.5 4,388,941 + Shew_3684 0.43 +1.6 4,389,268 - Shew_3684 0.89 +1.7 4,389,421 - Shew_3685 0.11 +1.2 4,389,503 - Shew_3685 0.22 +1.5 4,389,509 + Shew_3685 0.23 +1.5 4,389,547 + Shew_3685 0.28 +2.0 4,389,716 + Shew_3685 0.52 +0.9 4,389,809 - Shew_3685 0.65 +0.5 4,389,929 - Shew_3685 0.81 +1.1 4,390,248 - Shew_3686 0.34 +0.7 4,390,248 - Shew_3686 0.34 +1.8
Or see this region's nucleotide sequence