Strain Fitness in Shewanella loihica PV-4 around Shew_3684

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3683 and Shew_3684 overlap by 4 nucleotidesShew_3684 and Shew_3685 are separated by 2 nucleotidesShew_3685 and Shew_3686 overlap by 17 nucleotides Shew_3683: Shew_3683 - extracellular solute-binding protein (RefSeq), at 4,387,826 to 4,388,638 _3683 Shew_3684: Shew_3684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 4,388,635 to 4,389,342 _3684 Shew_3685: Shew_3685 - ABC transporter-related protein (RefSeq), at 4,389,345 to 4,390,061 _3685 Shew_3686: Shew_3686 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 4,390,045 to 4,390,635 _3686 Position (kb) 4388 4389 4390Strain fitness (log2 ratio) -1 0 1 2 3at 4387.893 kb on + strandat 4388.002 kb on - strand, within Shew_3683at 4388.174 kb on + strand, within Shew_3683at 4388.237 kb on + strand, within Shew_3683at 4388.358 kb on - strand, within Shew_3683at 4388.384 kb on - strand, within Shew_3683at 4388.578 kb on - strandat 4388.638 kb on + strandat 4388.654 kb on + strandat 4388.768 kb on + strand, within Shew_3684at 4388.868 kb on - strand, within Shew_3684at 4388.941 kb on + strand, within Shew_3684at 4389.268 kb on - strand, within Shew_3684at 4389.421 kb on - strand, within Shew_3685at 4389.503 kb on - strand, within Shew_3685at 4389.509 kb on + strand, within Shew_3685at 4389.547 kb on + strand, within Shew_3685at 4389.716 kb on + strand, within Shew_3685at 4389.809 kb on - strand, within Shew_3685at 4389.929 kb on - strand, within Shew_3685at 4390.248 kb on - strand, within Shew_3686at 4390.248 kb on - strand, within Shew_3686

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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4,387,893 + -1.1
4,388,002 - Shew_3683 0.22 +2.8
4,388,174 + Shew_3683 0.43 +0.6
4,388,237 + Shew_3683 0.51 +1.3
4,388,358 - Shew_3683 0.65 +1.3
4,388,384 - Shew_3683 0.69 +1.6
4,388,578 - +1.4
4,388,638 + +1.7
4,388,654 + +1.4
4,388,768 + Shew_3684 0.19 +1.8
4,388,868 - Shew_3684 0.33 +1.5
4,388,941 + Shew_3684 0.43 +1.6
4,389,268 - Shew_3684 0.89 +1.7
4,389,421 - Shew_3685 0.11 +1.2
4,389,503 - Shew_3685 0.22 +1.5
4,389,509 + Shew_3685 0.23 +1.5
4,389,547 + Shew_3685 0.28 +2.0
4,389,716 + Shew_3685 0.52 +0.9
4,389,809 - Shew_3685 0.65 +0.5
4,389,929 - Shew_3685 0.81 +1.1
4,390,248 - Shew_3686 0.34 +0.7
4,390,248 - Shew_3686 0.34 +1.8

Or see this region's nucleotide sequence