Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3606 and Shew_3607 are separated by 248 nucleotides Shew_3607 and Shew_3608 overlap by 1 nucleotides Shew_3608 and Shew_3609 are separated by 78 nucleotides
Shew_3606: Shew_3606 - signal recognition particle-docking protein FtsY (RefSeq), at 4,304,363 to 4,306,048
_3606
Shew_3607: Shew_3607 - putative methyltransferase (RefSeq), at 4,306,297 to 4,306,884
_3607
Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174
_3608
Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014
_3609
Position (kb)
4306
4307 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4306.057 kb on - strand at 4306.057 kb on - strand at 4306.234 kb on + strand at 4306.234 kb on + strand at 4306.234 kb on + strand at 4306.240 kb on + strand at 4306.242 kb on - strand at 4306.242 kb on - strand at 4306.248 kb on - strand at 4306.326 kb on + strand at 4306.501 kb on - strand, within Shew_3607 at 4306.616 kb on - strand, within Shew_3607 at 4306.617 kb on - strand, within Shew_3607 at 4306.632 kb on + strand, within Shew_3607 at 4306.699 kb on + strand, within Shew_3607 at 4306.704 kb on + strand, within Shew_3607 at 4306.755 kb on + strand, within Shew_3607 at 4306.868 kb on - strand at 4307.094 kb on + strand, within Shew_3608 at 4307.322 kb on + strand at 4307.398 kb on + strand, within Shew_3609 at 4307.431 kb on - strand, within Shew_3609 at 4307.849 kb on + strand, within Shew_3609
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 4,306,057 - -0.6 4,306,057 - -0.6 4,306,234 + +0.0 4,306,234 + -0.8 4,306,234 + -0.4 4,306,240 + -0.7 4,306,242 - -3.1 4,306,242 - -0.6 4,306,248 - -0.1 4,306,326 + -1.8 4,306,501 - Shew_3607 0.35 -1.5 4,306,616 - Shew_3607 0.54 -2.6 4,306,617 - Shew_3607 0.54 -2.0 4,306,632 + Shew_3607 0.57 -1.9 4,306,699 + Shew_3607 0.68 -2.1 4,306,704 + Shew_3607 0.69 -2.6 4,306,755 + Shew_3607 0.78 -1.8 4,306,868 - -0.4 4,307,094 + Shew_3608 0.72 -2.9 4,307,322 + -1.1 4,307,398 + Shew_3609 0.19 +1.5 4,307,431 - Shew_3609 0.23 -0.8 4,307,849 + Shew_3609 0.78 -2.0
Or see this region's nucleotide sequence