Strain Fitness in Shewanella loihica PV-4 around Shew_3607

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3606 and Shew_3607 are separated by 248 nucleotidesShew_3607 and Shew_3608 overlap by 1 nucleotidesShew_3608 and Shew_3609 are separated by 78 nucleotides Shew_3606: Shew_3606 - signal recognition particle-docking protein FtsY (RefSeq), at 4,304,363 to 4,306,048 _3606 Shew_3607: Shew_3607 - putative methyltransferase (RefSeq), at 4,306,297 to 4,306,884 _3607 Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174 _3608 Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014 _3609 Position (kb) 4306 4307Strain fitness (log2 ratio) -3 -2 -1 0 1at 4306.057 kb on - strandat 4306.057 kb on - strandat 4306.234 kb on + strandat 4306.234 kb on + strandat 4306.234 kb on + strandat 4306.240 kb on + strandat 4306.242 kb on - strandat 4306.242 kb on - strandat 4306.248 kb on - strandat 4306.326 kb on + strandat 4306.501 kb on - strand, within Shew_3607at 4306.616 kb on - strand, within Shew_3607at 4306.617 kb on - strand, within Shew_3607at 4306.632 kb on + strand, within Shew_3607at 4306.699 kb on + strand, within Shew_3607at 4306.704 kb on + strand, within Shew_3607at 4306.755 kb on + strand, within Shew_3607at 4306.868 kb on - strandat 4307.094 kb on + strand, within Shew_3608at 4307.322 kb on + strandat 4307.398 kb on + strand, within Shew_3609at 4307.431 kb on - strand, within Shew_3609at 4307.849 kb on + strand, within Shew_3609

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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4,306,057 - -0.6
4,306,057 - -0.6
4,306,234 + +0.0
4,306,234 + -0.8
4,306,234 + -0.4
4,306,240 + -0.7
4,306,242 - -3.1
4,306,242 - -0.6
4,306,248 - -0.1
4,306,326 + -1.8
4,306,501 - Shew_3607 0.35 -1.5
4,306,616 - Shew_3607 0.54 -2.6
4,306,617 - Shew_3607 0.54 -2.0
4,306,632 + Shew_3607 0.57 -1.9
4,306,699 + Shew_3607 0.68 -2.1
4,306,704 + Shew_3607 0.69 -2.6
4,306,755 + Shew_3607 0.78 -1.8
4,306,868 - -0.4
4,307,094 + Shew_3608 0.72 -2.9
4,307,322 + -1.1
4,307,398 + Shew_3609 0.19 +1.5
4,307,431 - Shew_3609 0.23 -0.8
4,307,849 + Shew_3609 0.78 -2.0

Or see this region's nucleotide sequence