Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3375 and Shew_3376 are separated by 60 nucleotides Shew_3376 and Shew_3377 are separated by 6 nucleotides Shew_3377 and Shew_3378 are separated by 3 nucleotides Shew_3378 and Shew_3379 are separated by 111 nucleotides Shew_3379 and Shew_3380 overlap by 1 nucleotides
Shew_3375: Shew_3375 - 2-polyprenylphenol 6-hydroxylase (RefSeq), at 4,024,205 to 4,025,854
_3375
Shew_3376: Shew_3376 - twin arginine-targeting protein translocase (RefSeq), at 4,025,915 to 4,026,145
_3376
Shew_3377: Shew_3377 - twin-arginine translocation protein, TatB subunit (RefSeq), at 4,026,152 to 4,026,550
_3377
Shew_3378: Shew_3378 - Sec-independent protein translocase, TatC subunit (RefSeq), at 4,026,554 to 4,027,309
_3378
Shew_3379: Shew_3379 - hypothetical protein (RefSeq), at 4,027,421 to 4,027,960
_3379
Shew_3380: Shew_3380 - TatD-related deoxyribonuclease (RefSeq), at 4,027,960 to 4,028,769
_3380
Position (kb) 4026
4027
4028 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4026.495 kb on - strand, within Shew_3377 at 4026.851 kb on + strand, within Shew_3378 at 4027.007 kb on + strand, within Shew_3378 at 4027.051 kb on - strand, within Shew_3378 at 4027.645 kb on + strand, within Shew_3379 at 4027.653 kb on - strand, within Shew_3379 at 4028.036 kb on - strand at 4028.081 kb on + strand, within Shew_3380 at 4028.142 kb on - strand, within Shew_3380
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 4,026,495 - Shew_3377 0.86 -1.2 4,026,851 + Shew_3378 0.39 -2.5 4,027,007 + Shew_3378 0.60 -1.2 4,027,051 - Shew_3378 0.66 -0.2 4,027,645 + Shew_3379 0.41 +1.6 4,027,653 - Shew_3379 0.43 +2.0 4,028,036 - +1.8 4,028,081 + Shew_3380 0.15 +0.6 4,028,142 - Shew_3380 0.22 +1.3
Or see this region's nucleotide sequence