Strain Fitness in Shewanella loihica PV-4 around Shew_2923

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2921 and Shew_2922 are separated by 198 nucleotidesShew_2922 and Shew_2923 are separated by 98 nucleotidesShew_2923 and Shew_2924 are separated by 241 nucleotides Shew_2921: Shew_2921 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq), at 3,459,650 to 3,460,843 _2921 Shew_2922: Shew_2922 - hypothetical protein (RefSeq), at 3,461,042 to 3,461,344 _2922 Shew_2923: Shew_2923 - tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq), at 3,461,443 to 3,462,867 _2923 Shew_2924: Shew_2924 - PhoH family protein (RefSeq), at 3,463,109 to 3,464,152 _2924 Position (kb) 3461 3462 3463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3460.829 kb on - strandat 3461.144 kb on - strand, within Shew_2922at 3461.205 kb on + strand, within Shew_2922at 3461.236 kb on + strand, within Shew_2922at 3461.498 kb on + strandat 3461.660 kb on + strand, within Shew_2923at 3461.948 kb on - strand, within Shew_2923at 3461.954 kb on + strand, within Shew_2923at 3462.023 kb on - strand, within Shew_2923at 3462.253 kb on + strand, within Shew_2923at 3462.454 kb on - strand, within Shew_2923

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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3,460,829 - -3.8
3,461,144 - Shew_2922 0.34 +0.4
3,461,205 + Shew_2922 0.54 +0.2
3,461,236 + Shew_2922 0.64 +0.1
3,461,498 + -0.9
3,461,660 + Shew_2923 0.15 -1.5
3,461,948 - Shew_2923 0.35 -0.4
3,461,954 + Shew_2923 0.36 -0.6
3,462,023 - Shew_2923 0.41 -1.3
3,462,253 + Shew_2923 0.57 -2.8
3,462,454 - Shew_2923 0.71 -0.4

Or see this region's nucleotide sequence