Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2720 and Shew_2721 are separated by 331 nucleotides Shew_2721 and Shew_2722 are separated by 81 nucleotides Shew_2722 and Shew_2723 are separated by 46 nucleotides Shew_2723 and Shew_2724 are separated by 94 nucleotides
Shew_2720: Shew_2720 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,219,709 to 3,221,550
_2720
Shew_2721: Shew_2721 - hypothetical protein (RefSeq), at 3,221,882 to 3,222,154
_2721
Shew_2722: Shew_2722 - hypothetical protein (RefSeq), at 3,222,236 to 3,222,943
_2722
Shew_2723: Shew_2723 - NUDIX hydrolase (RefSeq), at 3,222,990 to 3,223,526
_2723
Shew_2724: Shew_2724 - indigoidine synthase A family protein (RefSeq), at 3,223,621 to 3,224,535
_2724
Position (kb)
3222
3223 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3221.323 kb on + strand, within Shew_2720 at 3221.333 kb on + strand, within Shew_2720 at 3221.341 kb on - strand, within Shew_2720 at 3221.413 kb on + strand at 3222.087 kb on - strand, within Shew_2721 at 3222.340 kb on + strand, within Shew_2722 at 3222.625 kb on + strand, within Shew_2722 at 3222.633 kb on - strand, within Shew_2722 at 3223.193 kb on + strand, within Shew_2723 at 3223.247 kb on + strand, within Shew_2723 at 3223.911 kb on + strand, within Shew_2724 at 3223.911 kb on + strand, within Shew_2724 at 3223.919 kb on - strand, within Shew_2724
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 3,221,323 + Shew_2720 0.88 -0.4 3,221,333 + Shew_2720 0.88 -0.1 3,221,341 - Shew_2720 0.89 +1.2 3,221,413 + +0.3 3,222,087 - Shew_2721 0.75 -3.2 3,222,340 + Shew_2722 0.15 +0.4 3,222,625 + Shew_2722 0.55 +0.5 3,222,633 - Shew_2722 0.56 +0.6 3,223,193 + Shew_2723 0.38 -0.3 3,223,247 + Shew_2723 0.48 +0.4 3,223,911 + Shew_2724 0.32 +0.6 3,223,911 + Shew_2724 0.32 +0.9 3,223,919 - Shew_2724 0.33 +0.5
Or see this region's nucleotide sequence