Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2693 and Shew_2694 are separated by 262 nucleotides Shew_2694 and Shew_2695 are separated by 22 nucleotides Shew_2695 and Shew_2696 are separated by 17 nucleotides
Shew_2693: Shew_2693 - hypothetical protein (RefSeq), at 3,188,495 to 3,189,448
_2693
Shew_2694: Shew_2694 - peptidase (RefSeq), at 3,189,711 to 3,190,028
_2694
Shew_2695: Shew_2695 - two component transcriptional regulator (RefSeq), at 3,190,051 to 3,190,731
_2695
Shew_2696: Shew_2696 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 3,190,749 to 3,192,203
_2696
Position (kb)
3189
3190
3191 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3188.937 kb on - strand, within Shew_2693 at 3189.232 kb on + strand, within Shew_2693 at 3189.232 kb on + strand, within Shew_2693 at 3189.364 kb on - strand at 3189.487 kb on - strand at 3189.672 kb on + strand at 3190.135 kb on - strand, within Shew_2695 at 3190.212 kb on + strand, within Shew_2695 at 3190.268 kb on + strand, within Shew_2695 at 3190.416 kb on + strand, within Shew_2695 at 3190.916 kb on + strand, within Shew_2696 at 3190.924 kb on - strand, within Shew_2696
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 3,188,937 - Shew_2693 0.46 -1.4 3,189,232 + Shew_2693 0.77 -1.4 3,189,232 + Shew_2693 0.77 +0.2 3,189,364 - -0.8 3,189,487 - +0.5 3,189,672 + -0.3 3,190,135 - Shew_2695 0.12 -0.8 3,190,212 + Shew_2695 0.24 -1.4 3,190,268 + Shew_2695 0.32 +1.4 3,190,416 + Shew_2695 0.54 -1.8 3,190,916 + Shew_2696 0.11 -2.4 3,190,924 - Shew_2696 0.12 -4.0
Or see this region's nucleotide sequence