Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2428 and Shew_2429 are separated by 0 nucleotides Shew_2429 and Shew_2430 overlap by 13 nucleotides Shew_2430 and Shew_2431 overlap by 4 nucleotides
Shew_2428: Shew_2428 - hypothetical protein (RefSeq), at 2,854,129 to 2,855,058
_2428
Shew_2429: Shew_2429 - hypothetical protein (RefSeq), at 2,855,059 to 2,855,553
_2429
Shew_2430: Shew_2430 - von Willebrand factor, type A (RefSeq), at 2,855,541 to 2,856,560
_2430
Shew_2431: Shew_2431 - TPR repeat-containing protein (RefSeq), at 2,856,557 to 2,858,638
_2431
Position (kb)
2855
2856
2857 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2854.742 kb on - strand, within Shew_2428 at 2854.911 kb on - strand, within Shew_2428 at 2855.116 kb on - strand, within Shew_2429 at 2855.525 kb on - strand at 2855.546 kb on - strand at 2855.805 kb on + strand, within Shew_2430 at 2856.167 kb on + strand, within Shew_2430 at 2856.231 kb on - strand, within Shew_2430 at 2856.231 kb on - strand, within Shew_2430 at 2856.906 kb on - strand, within Shew_2431 at 2856.944 kb on + strand, within Shew_2431 at 2857.047 kb on - strand, within Shew_2431 at 2857.114 kb on + strand, within Shew_2431
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 2,854,742 - Shew_2428 0.66 -0.6 2,854,911 - Shew_2428 0.84 -1.4 2,855,116 - Shew_2429 0.12 -3.7 2,855,525 - -0.7 2,855,546 - -0.7 2,855,805 + Shew_2430 0.26 -1.3 2,856,167 + Shew_2430 0.61 -0.7 2,856,231 - Shew_2430 0.68 -0.2 2,856,231 - Shew_2430 0.68 -0.7 2,856,906 - Shew_2431 0.17 -1.8 2,856,944 + Shew_2431 0.19 -0.4 2,857,047 - Shew_2431 0.24 -1.3 2,857,114 + Shew_2431 0.27 -0.1
Or see this region's nucleotide sequence