Strain Fitness in Shewanella loihica PV-4 around Shew_2322

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2321 and Shew_2322 are separated by 344 nucleotidesShew_2322 and Shew_2323 are separated by 108 nucleotidesShew_2323 and Shew_2324 are separated by 316 nucleotides Shew_2321: Shew_2321 - inositol monophosphatase (RefSeq), at 2,716,213 to 2,717,016 _2321 Shew_2322: Shew_2322 - NnrS family protein (RefSeq), at 2,717,361 to 2,718,533 _2322 Shew_2323: Shew_2323 - phosphate-starvation-inducible E (RefSeq), at 2,718,642 to 2,719,046 _2323 Shew_2324: Shew_2324 - type IV pilus assembly PilZ (RefSeq), at 2,719,363 to 2,719,665 _2324 Position (kb) 2717 2718 2719Strain fitness (log2 ratio) -1 0 1at 2717.445 kb on + strandat 2717.448 kb on + strandat 2717.621 kb on - strand, within Shew_2322at 2718.206 kb on - strand, within Shew_2322at 2718.321 kb on + strand, within Shew_2322at 2718.411 kb on - strand, within Shew_2322at 2718.763 kb on - strand, within Shew_2323at 2718.786 kb on + strand, within Shew_2323at 2719.183 kb on - strandat 2719.464 kb on + strand, within Shew_2324

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,717,445 + +0.9
2,717,448 + +1.4
2,717,621 - Shew_2322 0.22 +0.6
2,718,206 - Shew_2322 0.72 +0.0
2,718,321 + Shew_2322 0.82 +0.5
2,718,411 - Shew_2322 0.90 -0.2
2,718,763 - Shew_2323 0.30 +0.1
2,718,786 + Shew_2323 0.36 +0.1
2,719,183 - +0.9
2,719,464 + Shew_2324 0.33 -1.5

Or see this region's nucleotide sequence