Strain Fitness in Shewanella loihica PV-4 around Shew_2281

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2280 and Shew_2281 are separated by 36 nucleotidesShew_2281 and Shew_2282 are separated by 196 nucleotides Shew_2280: Shew_2280 - phenylalanine/histidine ammonia-lyase (RefSeq), at 2,662,512 to 2,664,170 _2280 Shew_2281: Shew_2281 - flavocytochrome c (RefSeq), at 2,664,207 to 2,665,766 _2281 Shew_2282: Shew_2282 - Fis family transcriptional regulator (RefSeq), at 2,665,963 to 2,667,486 _2282 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -1 0 1at 2663.487 kb on - strand, within Shew_2280at 2663.506 kb on + strand, within Shew_2280at 2663.524 kb on - strand, within Shew_2280at 2663.664 kb on + strand, within Shew_2280at 2664.113 kb on - strandat 2664.412 kb on - strand, within Shew_2281at 2665.245 kb on + strand, within Shew_2281at 2665.245 kb on + strand, within Shew_2281at 2665.253 kb on - strand, within Shew_2281at 2665.257 kb on + strand, within Shew_2281at 2666.145 kb on + strand, within Shew_2282at 2666.597 kb on - strand, within Shew_2282

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,663,487 - Shew_2280 0.59 +1.1
2,663,506 + Shew_2280 0.60 +0.8
2,663,524 - Shew_2280 0.61 -0.2
2,663,664 + Shew_2280 0.69 +0.0
2,664,113 - +0.4
2,664,412 - Shew_2281 0.13 +0.2
2,665,245 + Shew_2281 0.67 -1.3
2,665,245 + Shew_2281 0.67 +1.7
2,665,253 - Shew_2281 0.67 -0.8
2,665,257 + Shew_2281 0.67 -0.5
2,666,145 + Shew_2282 0.12 +0.7
2,666,597 - Shew_2282 0.42 -0.0

Or see this region's nucleotide sequence