Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2137 and Shew_2138 are separated by 44 nucleotides Shew_2138 and Shew_2139 are separated by 97 nucleotides Shew_2139 and Shew_2140 are separated by 74 nucleotides Shew_2140 and Shew_2141 are separated by 281 nucleotides
Shew_2137: Shew_2137 - glutathione S-transferase domain-containing protein (RefSeq), at 2,484,221 to 2,485,240
_2137
Shew_2138: Shew_2138 - hypothetical protein (RefSeq), at 2,485,285 to 2,485,509
_2138
Shew_2139: Shew_2139 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,485,607 to 2,486,089
_2139
Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036
_2140
Shew_2141: Shew_2141 - lytic murein transglycosylase (RefSeq), at 2,487,318 to 2,488,505
_2141
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-2
-1
0
1 at 2485.692 kb on - strand, within Shew_2139 at 2485.781 kb on + strand, within Shew_2139 at 2485.940 kb on - strand, within Shew_2139 at 2486.008 kb on - strand, within Shew_2139 at 2486.641 kb on - strand, within Shew_2140 at 2486.837 kb on + strand, within Shew_2140 at 2487.891 kb on - strand, within Shew_2141
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 2,485,692 - Shew_2139 0.18 +0.3 2,485,781 + Shew_2139 0.36 -1.6 2,485,940 - Shew_2139 0.69 +0.8 2,486,008 - Shew_2139 0.83 +0.3 2,486,641 - Shew_2140 0.55 +0.2 2,486,837 + Shew_2140 0.77 +1.7 2,487,891 - Shew_2141 0.48 -2.0
Or see this region's nucleotide sequence